Variant report

Variant	rs11155267
Chromosome Location	chr6:143205464-143205465
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143166680..143169916-chr6:143203323..143206412,3	MCF-7	breast:
2	chr6:143196732..143198934-chr6:143203908..143205844,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs109301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11155266	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198646	0.82[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes]
rs198653	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs198657	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs198668	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs198675	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs198682	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2142939	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2328386	0.95[JPT][hapmap]
rs2328387	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs765874	0.84[ASN][1000 genomes]
rs765875	0.83[ASN][1000 genomes]
rs926372	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs9376711	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143188600-143206200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:143189400-143205800	Weak transcription	Fetal Stomach	stomach
3	chr6:143191200-143205600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr6:143195200-143206000	Weak transcription	Aorta	Aorta
5	chr6:143196200-143205600	Weak transcription	HUVEC	blood vessel
6	chr6:143196400-143205600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:143196400-143205600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:143196400-143205600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:143196400-143205600	Weak transcription	NHEK	skin
10	chr6:143196600-143205800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:143196600-143206000	Weak transcription	HepG2	liver
12	chr6:143196800-143205800	Weak transcription	Spleen	Spleen
13	chr6:143196800-143206000	Weak transcription	Stomach Mucosa	stomach
14	chr6:143197000-143205800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:143197000-143205800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:143199800-143205800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:143200000-143206000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:143200000-143206000	Weak transcription	Right Ventricle	heart
19	chr6:143201000-143205800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:143201200-143205600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr6:143201600-143205800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:143202000-143206200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:143202000-143206200	Weak transcription	Lung	lung
24	chr6:143202200-143205600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:143202200-143205600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:143202400-143206000	Enhancers	Brain Angular Gyrus	brain
27	chr6:143202600-143205600	Enhancers	Fetal Heart	heart
28	chr6:143202600-143205600	Enhancers	Thymus	Thymus
29	chr6:143202600-143205600	Enhancers	NHDF-Ad	bronchial
30	chr6:143202800-143205600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:143202800-143205600	Enhancers	Osteobl	bone
32	chr6:143203000-143205600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:143203000-143205800	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr6:143203200-143206000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr6:143203400-143205600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr6:143203400-143205600	Weak transcription	Right Atrium	heart
37	chr6:143203400-143205800	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:143203400-143206000	Weak transcription	Fetal Muscle Leg	muscle
39	chr6:143203400-143206200	Weak transcription	Pancreas	Pancrea
40	chr6:143203600-143205800	Enhancers	Fetal Brain Male	brain
41	chr6:143203600-143206000	Weak transcription	Placenta	Placenta
42	chr6:143203600-143206000	Weak transcription	Left Ventricle	heart
43	chr6:143203800-143205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:143203800-143205800	Weak transcription	Psoas Muscle	Psoas
45	chr6:143203800-143205800	Enhancers	NH-A	brain
46	chr6:143203800-143206000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr6:143203800-143206000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr6:143204000-143205600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:143204000-143205600	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr6:143204000-143205600	Enhancers	Primary T cells from cord blood	blood

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