Variant report

Variant	rs9376711
Chromosome Location	chr6:143206984-143206985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143206175..143208270-chr6:143265788..143268264,2	MCF-7	breast:
2	chr6:143206591..143209014-chr6:143209615..143211236,2	K562	blood:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs109301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155266	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155267	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs198646	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.82[AMR][1000 genomes]
rs198653	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs198657	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs198668	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs198675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198682	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2142939	0.91[JPT][hapmap]
rs2328386	0.95[JPT][hapmap]
rs2328387	0.91[JPT][hapmap]
rs765874	0.86[ASN][1000 genomes]
rs765875	0.85[ASN][1000 genomes]
rs926372	0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143205200-143207400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:143205400-143207000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:143205400-143207400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:143205400-143208600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:143205600-143207000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:143205600-143207000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr6:143205600-143207000	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr6:143205600-143207000	Flanking Active TSS	Osteobl	bone
9	chr6:143205600-143207200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:143205600-143207200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:143205600-143207200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr6:143205600-143207200	Active TSS	Right Atrium	heart
13	chr6:143205600-143207200	Flanking Active TSS	NHDF-Ad	bronchial
14	chr6:143205600-143208000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:143205800-143207000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr6:143205800-143207000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:143205800-143207000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:143205800-143207000	Flanking Active TSS	Brain Anterior Caudate	brain
19	chr6:143205800-143207000	Flanking Active TSS	Fetal Thymus	thymus
20	chr6:143205800-143207000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
21	chr6:143205800-143207200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:143205800-143207200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr6:143205800-143207400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:143206000-143207000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:143206000-143207200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:143206000-143207200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:143206000-143207200	Flanking Active TSS	Brain Angular Gyrus	brain
28	chr6:143206000-143208800	Enhancers	HepG2	liver
29	chr6:143206200-143207200	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr6:143206400-143207000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:143206400-143207000	Active TSS	Fetal Heart	heart
32	chr6:143206400-143207000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr6:143206400-143207000	Active TSS	Stomach Smooth Muscle	stomach
34	chr6:143206600-143207000	Active TSS	Primary T cells fromperipheralblood	blood
35	chr6:143206600-143207000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:143206600-143207000	Active TSS	Fetal Muscle Leg	muscle
37	chr6:143206600-143207000	Active TSS	GM12878-XiMat	blood
38	chr6:143206600-143207600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:143206600-143207600	Weak transcription	Small Intestine	intestine
40	chr6:143206600-143207800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:143206600-143208200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:143206600-143208800	Enhancers	Hela-S3	cervix
43	chr6:143206600-143209000	Enhancers	HUVEC	blood vessel
44	chr6:143206600-143221400	Weak transcription	Lung	lung
45	chr6:143206600-143239400	Weak transcription	Gastric	stomach
46	chr6:143206800-143207000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr6:143206800-143207000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr6:143206800-143207000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:143206800-143207000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr6:143206800-143207000	Enhancers	Fetal Kidney	kidney

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