Variant report

Variant	rs198668
Chromosome Location	chr6:143186361-143186362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143169186..143172085-chr6:143184516..143186851,2	MCF-7	breast:
2	chr6:143186229..143189198-chr6:143189787..143193222,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs109301	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155266	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11155267	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs198646	0.82[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs198653	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs198657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs198675	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs198682	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2142939	0.83[JPT][hapmap]
rs2328386	0.85[JPT][hapmap]
rs2328387	0.82[JPT][hapmap]
rs765874	0.91[ASN][1000 genomes]
rs765875	0.90[ASN][1000 genomes]
rs926372	0.81[JPT][hapmap]
rs9376711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143168400-143188600	Weak transcription	Aorta	Aorta
2	chr6:143173200-143188600	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143173600-143188200	Weak transcription	NHLF	lung
4	chr6:143175600-143192000	Weak transcription	NHEK	skin
5	chr6:143175600-143192200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143175600-143192800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:143176600-143186800	Weak transcription	Esophagus	oesophagus
8	chr6:143176600-143188200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:143176600-143192400	Weak transcription	NHDF-Ad	bronchial
10	chr6:143177000-143192200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143178200-143192800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:143179400-143188400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:143179600-143187000	Weak transcription	Fetal Stomach	stomach
14	chr6:143179600-143187800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:143179600-143188000	Weak transcription	HSMMtube	muscle
16	chr6:143179600-143188600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:143179600-143188600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:143179600-143189200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:143179600-143191200	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:143179600-143195000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:143179600-143195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:143179800-143188000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:143180600-143188600	Weak transcription	Fetal Thymus	thymus
24	chr6:143180600-143193000	Weak transcription	Thymus	Thymus
25	chr6:143180800-143186600	Weak transcription	Primary B cells from cord blood	blood
26	chr6:143182200-143192800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:143182400-143188400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:143182800-143188200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:143183200-143191200	Weak transcription	Right Ventricle	heart
30	chr6:143183400-143187000	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:143183400-143187400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:143183400-143188400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:143183400-143188400	Weak transcription	GM12878-XiMat	blood
34	chr6:143184400-143188400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:143184400-143189000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:143184600-143188000	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:143184600-143188600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
38	chr6:143184600-143190200	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:143184800-143187000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:143184800-143187800	Enhancers	Brain Angular Gyrus	brain
41	chr6:143184800-143189000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr6:143184800-143190200	Enhancers	Primary T cells from cord blood	blood
43	chr6:143184800-143190600	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr6:143185200-143190200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr6:143185400-143186600	Weak transcription	Fetal Kidney	kidney
46	chr6:143185400-143186800	Weak transcription	Psoas Muscle	Psoas
47	chr6:143185400-143186800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:143185400-143187400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:143185400-143187400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:143185400-143188400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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