Variant report

Variant	rs11155285
Chromosome Location	chr6:143580111-143580112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11155286	0.90[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11155287	0.80[JPT][hapmap]
rs11757344	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390072	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390075	0.84[ASW][hapmap]
rs9484717	0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11155285	GRM1	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
3	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
4	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
7	chr6:143570000-143581600	Weak transcription	NHEK	skin
8	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143571400-143581800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:143574400-143583000	Weak transcription	Liver	Liver
11	chr6:143576200-143585800	Weak transcription	Fetal Lung	lung
12	chr6:143579000-143581800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:143579000-143585600	Weak transcription	Fetal Stomach	stomach
14	chr6:143579800-143581000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:143579800-143589400	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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