Variant report

Variant	rs11757344
Chromosome Location	chr6:143588399-143588400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143586956..143589894-chr6:143593616..143595223,2	K562	blood:
2	chr6:143581976..143584706-chr6:143586889..143589875,2	MCF-7	breast:
3	chr6:143587249..143590033-chr6:143590685..143593410,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11155285	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155286	0.90[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs11155287	0.80[JPT][hapmap]
rs4895606	0.84[ASW][hapmap]
rs892713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390072	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390075	1.00[ASW][hapmap]
rs9484717	0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11757344	GRM1	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
4	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143579800-143589400	Weak transcription	Left Ventricle	heart
6	chr6:143582400-143590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:143582400-143591800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:143582600-143591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:143582600-143591200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:143583800-143588800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:143583800-143615400	Weak transcription	K562	blood
13	chr6:143585800-143592000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:143586800-143591200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:143586800-143592000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:143587000-143588400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:143587000-143590000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:143587000-143591400	Weak transcription	Fetal Lung	lung
19	chr6:143587000-143592000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:143587000-143592000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:143587200-143588400	Weak transcription	Fetal Heart	heart
22	chr6:143587200-143588800	Weak transcription	Fetal Stomach	stomach
23	chr6:143587200-143589200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:143587200-143590800	Weak transcription	NHDF-Ad	bronchial
25	chr6:143587200-143591800	Weak transcription	Ovary	ovary
26	chr6:143587400-143591800	Weak transcription	Fetal Brain Male	brain
27	chr6:143587400-143592000	Weak transcription	HSMM	muscle
28	chr6:143587600-143589000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:143588200-143589000	Genic enhancers	Liver	Liver

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