Variant report

Variant	rs9390075
Chromosome Location	chr6:143598107-143598108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143597460..143598966-chr6:143607204..143609984,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11155285	0.84[ASW][hapmap]
rs11751030	0.82[CEU][hapmap]
rs11752486	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11752523	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11753012	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11753048	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11753058	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs11754065	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11754096	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11755477	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11756753	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11757293	0.83[CEU][hapmap];0.81[AFR][1000 genomes]
rs11757344	1.00[ASW][hapmap]
rs11757350	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12055598	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1364651	0.81[AFR][1000 genomes]
rs1559599	0.83[CEU][hapmap];0.85[GIH][hapmap]
rs2117500	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4895606	0.84[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4895607	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896632	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[EUR][1000 genomes]
rs4896633	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896634	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896635	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896636	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896637	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896639	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4896640	0.94[CEU][hapmap]
rs55833035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56777119	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56805320	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57732613	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59887794	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61394207	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61517177	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67976828	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6937858	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72996196	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9373386	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9376741	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9386030	0.87[EUR][1000 genomes]
rs9390074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390076	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs9390078	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9399439	0.83[CEU][hapmap];0.85[GIH][hapmap]
rs9403478	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403483	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496561	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9496565	0.94[CEU][hapmap]
rs967633	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9800569	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
3	chr6:143583800-143615400	Weak transcription	K562	blood
4	chr6:143589000-143607400	Weak transcription	Aorta	Aorta
5	chr6:143591400-143605200	Weak transcription	Liver	Liver
6	chr6:143592200-143605600	Weak transcription	Adipose Nuclei	Adipose
7	chr6:143593200-143606800	Weak transcription	NHEK	skin
8	chr6:143593400-143607000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143595400-143605400	Weak transcription	HepG2	liver
10	chr6:143595600-143602800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143597400-143598200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:143597400-143598400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr6:143597600-143598200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:143597600-143598200	Enhancers	Primary B cells from peripheral blood	blood
15	chr6:143597600-143598200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:143598000-143598200	Flanking Active TSS	GM12878-XiMat	blood

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