Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143578191..143580326-chr6:143614788..143617612,2	K562	blood:
2	chr6:143612544..143614515-chr6:143615465..143617568,2	K562	blood:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11752523	0.94[CEU][hapmap];0.80[JPT][hapmap]
rs11753012	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs11753048	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs11753058	0.93[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs11754065	0.94[CEU][hapmap];0.80[JPT][hapmap]
rs11754096	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs11755477	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs11756509	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2328473	0.97[ASN][1000 genomes]
rs4895606	0.88[CEU][hapmap]
rs4895607	0.94[CEU][hapmap]
rs4896632	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs4896633	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs4896634	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs4896635	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs4896636	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs4896637	0.94[CEU][hapmap];0.85[JPT][hapmap]
rs4896639	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs4896640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937554	0.80[YRI][hapmap]
rs6937858	0.94[CEU][hapmap];0.81[JPT][hapmap]
rs9376740	0.91[YRI][hapmap]
rs9376741	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs9390074	0.94[CEU][hapmap]
rs9390075	0.94[CEU][hapmap]
rs9390076	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs9390082	0.97[ASN][1000 genomes]
rs9399435	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9403478	0.94[CEU][hapmap]
rs9403485	0.82[CEU][hapmap]
rs9403486	0.83[CEU][hapmap]
rs9496561	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs967633	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs9908	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16462	chr6:143615919-143619253	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:143605600-143622000	Weak transcription	HepG2	liver
5	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
8	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
9	chr6:143608800-143619800	Weak transcription	HMEC	breast
10	chr6:143608800-143624200	Weak transcription	Ovary	ovary
11	chr6:143608800-143629400	Weak transcription	NHEK	skin
12	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
15	chr6:143611200-143616800	Strong transcription	Liver	Liver
16	chr6:143612200-143617000	Weak transcription	Lung	lung
17	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143615400-143616800	Strong transcription	K562	blood
19	chr6:143615400-143643400	Weak transcription	HSMM	muscle
20	chr6:143616400-143618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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