Variant report

Variant	rs6937554
Chromosome Location	chr6:143613979-143613980
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143612544..143614515-chr6:143615465..143617568,2	K562	blood:
2	chr6:143613439..143614088-chr6:143658471..143659090,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12175842	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12527663	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1469789	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2208819	0.80[EUR][1000 genomes]
rs56303707	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66583367	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7451540	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373388	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376740	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399437	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496565	0.80[YRI][hapmap]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143583800-143615400	Weak transcription	K562	blood
2	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
6	chr6:143605600-143622000	Weak transcription	HepG2	liver
7	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
10	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
11	chr6:143608800-143619800	Weak transcription	HMEC	breast
12	chr6:143608800-143624200	Weak transcription	Ovary	ovary
13	chr6:143608800-143629400	Weak transcription	NHEK	skin
14	chr6:143609400-143614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:143610000-143614200	Weak transcription	Brain Anterior Caudate	brain
18	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
19	chr6:143611200-143616800	Strong transcription	Liver	Liver
20	chr6:143612200-143617000	Weak transcription	Lung	lung
21	chr6:143612600-143614400	Weak transcription	Fetal Stomach	stomach
22	chr6:143613400-143614400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine

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