Variant report

Variant	rs7451540
Chromosome Location	chr6:143628068-143628069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12175842	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527663	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1469789	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2208819	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56303707	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66583367	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937554	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9373388	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376740	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399437	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143608800-143629400	Weak transcription	NHEK	skin
2	chr6:143615400-143643400	Weak transcription	HSMM	muscle
3	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143620600-143629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:143621200-143629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:143622600-143629400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:143623000-143629200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:143623200-143630200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143623200-143644600	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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