Variant report

Variant	rs1469789
Chromosome Location	chr6:143621390-143621391
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12175842	0.86[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12527663	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2208819	0.85[ASN][1000 genomes]
rs56303707	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66583367	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7451540	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373388	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9399437	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143605600-143622000	Weak transcription	HepG2	liver
3	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
5	chr6:143608800-143624200	Weak transcription	Ovary	ovary
6	chr6:143608800-143629400	Weak transcription	NHEK	skin
7	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
10	chr6:143615400-143643400	Weak transcription	HSMM	muscle
11	chr6:143616800-143624400	Weak transcription	K562	blood
12	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
13	chr6:143619200-143621400	Enhancers	Fetal Heart	heart
14	chr6:143619600-143623600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:143620600-143629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:143620800-143622400	Weak transcription	Liver	Liver
17	chr6:143621200-143621400	Enhancers	GM12878-XiMat	blood
18	chr6:143621200-143624200	Weak transcription	Left Ventricle	heart
19	chr6:143621200-143629000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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