Variant report

Variant	rs66583367
Chromosome Location	chr6:143618589-143618590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12175842	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12527663	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1469789	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2208819	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56303707	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937554	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7451540	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373388	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9399437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv16462	chr6:143615919-143619253	Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143605600-143622000	Weak transcription	HepG2	liver
4	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
7	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
8	chr6:143608800-143619800	Weak transcription	HMEC	breast
9	chr6:143608800-143624200	Weak transcription	Ovary	ovary
10	chr6:143608800-143629400	Weak transcription	NHEK	skin
11	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
14	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:143615400-143643400	Weak transcription	HSMM	muscle
16	chr6:143616400-143618600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:143616800-143620200	Weak transcription	Liver	Liver
18	chr6:143616800-143624400	Weak transcription	K562	blood
19	chr6:143618400-143619800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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