Variant report

Variant	rs9373388
Chromosome Location	chr6:143646783-143646784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr6:143646440-143647429	SK-N-SH	brain:	n/a	n/a
2	EP300	chr6:143646497-143646812	SK-N-SH_RA	brain:	n/a	n/a
3	POLR2A	chr6:143646524-143647007	HUVEC	blood vessel:	n/a	n/a
4	NFIC	chr6:143646448-143646957	SK-N-SH	brain:	n/a	n/a
5	JUN	chr6:143646515-143646920	HUVEC	blood vessel:	n/a	n/a
6	EP300	chr6:143646505-143646899	SK-N-SH_RA	brain:	n/a	n/a
7	GATA3	chr6:143646335-143647079	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr6:143646608-143646820	HUVEC	blood vessel:	n/a	n/a
9	FOS	chr6:143646471-143647341	MCF10A-Er-Src	breast:	n/a	chr6:143647163-143647171 chr6:143647163-143647170
10	STAT3	chr6:143646506-143647202	MCF10A-Er-Src	breast:	n/a	n/a
11	FOSL2	chr6:143646507-143647294	SK-N-SH	brain:	n/a	chr6:143647163-143647171 chr6:143647163-143647170
12	CEBPB	chr6:143646690-143646893	Hela-S3	cervix:	n/a	n/a
13	GATA3	chr6:143646397-143647177	SK-N-SH	brain:	n/a	n/a
14	EP300	chr6:143646619-143646793	Hela-S3	cervix:	n/a	n/a
15	MYC	chr6:143646534-143646862	MCF10A-Er-Src	breast:	n/a	n/a
16	FOS	chr6:143646517-143647322	MCF10A-Er-Src	breast:	n/a	chr6:143647163-143647171 chr6:143647163-143647170
17	POLR2A	chr6:143646336-143647273	MCF10A-Er-Src	breast:	n/a	n/a
18	POLR2A	chr6:143646573-143646836	HUVEC	blood vessel:	n/a	n/a
19	STAT3	chr6:143646568-143647082	MCF10A-Er-Src	breast:	n/a	n/a
20	TCF12	chr6:143646420-143647383	SK-N-SH	brain:	n/a	n/a
21	FOS	chr6:143646510-143647350	HUVEC	blood vessel:	n/a	chr6:143647163-143647171 chr6:143647163-143647170
22	GATA2	chr6:143646401-143647609	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr6:143646503-143646948	MCF10A-Er-Src	breast:	n/a	n/a
24	FOS	chr6:143646549-143647296	MCF10A-Er-Src	breast:	n/a	chr6:143647163-143647171 chr6:143647163-143647170
25	EP300	chr6:143646348-143647119	SK-N-SH	brain:	n/a	n/a
26	STAT3	chr6:143646515-143647140	MCF10A-Er-Src	breast:	n/a	n/a
27	E2F4	chr6:143646615-143646858	MCF10A-Er-Src	breast:	n/a	n/a
28	FOS	chr6:143646400-143647337	MCF10A-Er-Src	breast:	n/a	chr6:143647163-143647171 chr6:143647163-143647170
29	STAT3	chr6:143646430-143647225	MCF10A-Er-Src	breast:	n/a	n/a
30	PBX3	chr6:143646475-143647418	SK-N-SH	brain:	n/a	n/a
31	MYC	chr6:143646418-143647188	MCF10A-Er-Src	breast:	n/a	n/a
32	TCF12	chr6:143646446-143646971	SK-N-SH	brain:	n/a	n/a
33	CEBPB	chr6:143646620-143646860	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143640797..143643763-chr6:143645649..143648147,2	K562	blood:

Variant related genes	Relation type
ENSG00000216642	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12175842	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12527663	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1469789	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2208819	0.82[ASN][1000 genomes]
rs56303707	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66583367	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6937554	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7451540	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376740	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399437	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143643800-143653600	Weak transcription	Ovary	ovary
3	chr6:143643800-143661200	Weak transcription	Aorta	Aorta
4	chr6:143644600-143648600	Enhancers	NHEK	skin
5	chr6:143644600-143650400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:143644800-143652200	Enhancers	HMEC	breast
7	chr6:143645000-143648200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
9	chr6:143645200-143656800	Weak transcription	Psoas Muscle	Psoas
10	chr6:143645400-143647800	Weak transcription	Liver	Liver
11	chr6:143645400-143648400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:143645600-143647600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:143645800-143653600	Weak transcription	Fetal Stomach	stomach
14	chr6:143645800-143655600	Weak transcription	Fetal Brain Female	brain
15	chr6:143646000-143647200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:143646000-143647200	Enhancers	NHLF	lung
17	chr6:143646000-143647600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143646000-143647600	Enhancers	HSMMtube	muscle
19	chr6:143646000-143647600	Enhancers	NHDF-Ad	bronchial
20	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:143646200-143647400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:143646200-143647400	Enhancers	NH-A	brain
23	chr6:143646200-143647600	Enhancers	HSMM	muscle
24	chr6:143646200-143647600	Enhancers	HUVEC	blood vessel
25	chr6:143646200-143647600	Enhancers	Osteobl	bone
26	chr6:143646400-143646800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:143646400-143646800	Enhancers	Hela-S3	cervix
28	chr6:143646600-143647200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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