Variant report

Variant	rs967633
Chromosome Location	chr6:143620600-143620601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143381231..143383097-chr6:143619109..143620649,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAT2-1	chr6:143619907-143620691	NONHSAT115341

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11751030	0.83[CEU][hapmap]
rs11752486	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11752523	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11753012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11753048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11753058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11754065	1.00[CEU][hapmap];0.82[CHB][hapmap];0.94[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11754096	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11755388	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11755477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11756753	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11757293	0.83[CEU][hapmap]
rs11757350	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12055598	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1559599	0.83[CEU][hapmap]
rs2117500	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4895606	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs4895607	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4896632	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4896633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4896634	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4896639	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4896640	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs55833035	0.89[EUR][1000 genomes]
rs56777119	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56805320	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57732613	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59887794	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61394207	0.89[EUR][1000 genomes]
rs61517177	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67976828	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6937858	1.00[CEU][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72996196	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373386	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9376741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9386030	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9390074	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9390075	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9390076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390078	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399439	0.83[CEU][hapmap]
rs9403478	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9403483	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9496561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496565	0.94[CEU][hapmap];0.86[JPT][hapmap]
rs9800569	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143605600-143622000	Weak transcription	HepG2	liver
3	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
6	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
7	chr6:143608800-143624200	Weak transcription	Ovary	ovary
8	chr6:143608800-143629400	Weak transcription	NHEK	skin
9	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
12	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
13	chr6:143615400-143643400	Weak transcription	HSMM	muscle
14	chr6:143616800-143624400	Weak transcription	K562	blood
15	chr6:143618600-143620600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
17	chr6:143619200-143621400	Enhancers	Fetal Heart	heart
18	chr6:143619600-143623600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr6:143620200-143620800	Strong transcription	Liver	Liver
20	chr6:143620400-143621200	Flanking Active TSS	GM12878-XiMat	blood
21	chr6:143620600-143629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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