Variant report

Variant	rs61517177
Chromosome Location	chr6:143612004-143612005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11752486	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11752523	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11753012	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11753048	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11753058	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11754065	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754096	0.94[EUR][1000 genomes]
rs11755388	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755477	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11756753	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11757350	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12055598	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2117500	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895606	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4895607	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4896632	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896633	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896634	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896635	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896636	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896637	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896639	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55833035	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56777119	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56805320	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57732613	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59887794	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61394207	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67976828	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937858	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72996196	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373386	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376741	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386030	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390074	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9390075	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9390076	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390078	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403478	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403483	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496561	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs967633	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9800569	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3445490	chr6:143611617-143612080	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143583800-143615400	Weak transcription	K562	blood
2	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
6	chr6:143605600-143622000	Weak transcription	HepG2	liver
7	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
10	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
11	chr6:143608800-143612400	Weak transcription	Fetal Stomach	stomach
12	chr6:143608800-143619800	Weak transcription	HMEC	breast
13	chr6:143608800-143624200	Weak transcription	Ovary	ovary
14	chr6:143608800-143629400	Weak transcription	NHEK	skin
15	chr6:143609400-143614800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143609600-143612400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:143610000-143613400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:143610000-143614200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143611200-143616800	Strong transcription	Liver	Liver
23	chr6:143611400-143612200	Enhancers	Lung	lung
24	chr6:143611400-143613800	Strong transcription	Fetal Intestine Small	intestine
25	chr6:143611600-143612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:143611600-143613800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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