Variant report

Variant	rs67976828
Chromosome Location	chr6:143609249-143609250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143597460..143598966-chr6:143607204..143609984,2	K562	blood:
2	chr6:143603471..143605267-chr6:143607615..143610028,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11752486	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11752523	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11753012	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11753048	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11753058	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11754065	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754096	0.93[EUR][1000 genomes]
rs11755388	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11755477	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11756753	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11757350	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12055598	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2117500	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4895606	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4895607	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896632	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4896633	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4896634	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896635	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896636	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896637	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4896639	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55833035	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56777119	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56805320	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57732613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59887794	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61394207	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61517177	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937858	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72996196	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9373386	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376741	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9386030	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390074	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9390075	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9390076	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390078	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403478	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9403483	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9496561	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs967633	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9800569	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3474294	chr6:143606767-143611394	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3474295	chr6:143606932-143611286	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143583800-143615400	Weak transcription	K562	blood
2	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
3	chr6:143603000-143611000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:143603200-143609600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:143603200-143616800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:143605200-143610400	Strong transcription	Liver	Liver
8	chr6:143605400-143614600	Weak transcription	NHDF-Ad	bronchial
9	chr6:143605600-143622000	Weak transcription	HepG2	liver
10	chr6:143605800-143609400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:143606200-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143606800-143611400	Weak transcription	Fetal Intestine Small	intestine
13	chr6:143607000-143609400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:143607200-143609400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:143608200-143611400	Weak transcription	Lung	lung
17	chr6:143608400-143609400	Enhancers	Fetal Heart	heart
18	chr6:143608400-143610800	Weak transcription	NH-A	brain
19	chr6:143608400-143611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:143608600-143609800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
23	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
24	chr6:143608800-143610600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:143608800-143612400	Weak transcription	Fetal Stomach	stomach
26	chr6:143608800-143619800	Weak transcription	HMEC	breast
27	chr6:143608800-143624200	Weak transcription	Ovary	ovary
28	chr6:143608800-143629400	Weak transcription	NHEK	skin
29	chr6:143609000-143609400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:143609000-143611400	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:143609200-143609600	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr6:143609200-143609600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:143609200-143609800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:143609200-143610000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr6:143609200-143610000	Enhancers	H1 Cell Line	embryonic stem cell
36	chr6:143609200-143610000	Enhancers	H9 Cell Line	embryonic stem cell
37	chr6:143609200-143610000	Strong transcription	Brain Anterior Caudate	brain
38	chr6:143609200-143610000	Strong transcription	Fetal Intestine Large	intestine
39	chr6:143609200-143610600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:143609200-143611200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr6:143609200-143611600	Enhancers	HUES6 Cell Line	embryonic stem cell

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