Variant report

Variant	rs9403485
Chromosome Location	chr6:143657616-143657617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11751030	0.94[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes]
rs11753058	0.81[CEU][hapmap]
rs11755477	0.81[CEU][hapmap]
rs11757293	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs1364651	0.83[EUR][1000 genomes]
rs1559599	0.94[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes]
rs2161972	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2303386	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2328478	0.81[EUR][1000 genomes]
rs28502112	0.88[EUR][1000 genomes]
rs35362528	0.86[EUR][1000 genomes]
rs4896635	0.81[CEU][hapmap]
rs4896636	0.81[CEU][hapmap]
rs4896640	0.82[CEU][hapmap]
rs4896650	0.84[EUR][1000 genomes]
rs6924104	0.84[EUR][1000 genomes]
rs6937858	0.81[CEU][hapmap]
rs73000182	0.81[EUR][1000 genomes]
rs9399439	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes]
rs9403486	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496565	0.82[CEU][hapmap]
rs9496594	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9908	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143643800-143661200	Weak transcription	Aorta	Aorta
3	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
4	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:143647400-143658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143652400-143662200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:143652800-143664000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:143653000-143658200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:143653000-143659000	Weak transcription	K562	blood
10	chr6:143653000-143662200	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:143653000-143665600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:143653400-143663800	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr6:143653600-143658000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:143653800-143657800	Weak transcription	HSMMtube	muscle
15	chr6:143653800-143660600	Weak transcription	Fetal Stomach	stomach
16	chr6:143653800-143661000	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:143653800-143663400	Weak transcription	Fetal Lung	lung
18	chr6:143654000-143672000	Weak transcription	Ovary	ovary
19	chr6:143654200-143661600	Strong transcription	Liver	Liver
20	chr6:143654400-143667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:143654800-143658000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:143654800-143663600	Weak transcription	Fetal Kidney	kidney
23	chr6:143655200-143665800	Weak transcription	Fetal Intestine Large	intestine
24	chr6:143655400-143664400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr6:143655400-143666000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:143655600-143658200	Weak transcription	Esophagus	oesophagus
27	chr6:143655600-143667200	Weak transcription	Adipose Nuclei	Adipose
28	chr6:143655800-143659200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:143656000-143657800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:143656200-143659200	Enhancers	HMEC	breast
31	chr6:143656200-143662600	Weak transcription	Fetal Brain Female	brain
32	chr6:143656200-143662800	Weak transcription	HepG2	liver
33	chr6:143656400-143658800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:143656800-143658600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:143656800-143659000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:143657000-143658800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:143657000-143659800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr6:143657200-143658400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr6:143657200-143658400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:143657200-143658600	Enhancers	HSMM	muscle
41	chr6:143657200-143658600	Enhancers	NH-A	brain
42	chr6:143657200-143658600	Enhancers	Osteobl	bone
43	chr6:143657400-143657800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:143657400-143658200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:143657400-143658400	Enhancers	NHDF-Ad	bronchial
46	chr6:143657400-143658400	Enhancers	NHLF	lung
47	chr6:143657400-143658600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:143657400-143658800	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr6:143657600-143658000	Enhancers	NHEK	skin
50	chr6:143657600-143658600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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