Variant report

Variant	rs4896650
Chromosome Location	chr6:143677956-143677957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11751030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11751506	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11752523	0.81[CEU][hapmap]
rs11753012	0.82[CEU][hapmap]
rs11753048	0.82[CEU][hapmap]
rs11753058	0.87[CEU][hapmap]
rs11754065	0.81[CEU][hapmap]
rs11754096	0.81[CEU][hapmap]
rs11755477	0.82[CEU][hapmap]
rs11757293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11758932	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1364651	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1559599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2161972	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2303386	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2328478	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28502112	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35362528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4895607	0.82[CEU][hapmap]
rs4896632	0.81[CEU][hapmap]
rs4896633	0.81[CEU][hapmap]
rs4896635	0.82[CEU][hapmap]
rs4896636	0.82[CEU][hapmap]
rs4896637	0.81[CEU][hapmap]
rs4896639	0.82[CEU][hapmap]
rs6924104	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937858	0.87[CEU][hapmap]
rs73000182	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9376741	0.82[CEU][hapmap]
rs9390074	0.82[CEU][hapmap]
rs9390075	0.81[CEU][hapmap]
rs9390076	0.82[CEU][hapmap]
rs9399439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9399440	0.82[ASN][1000 genomes]
rs9403485	0.94[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs9403486	0.94[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs9496561	0.82[CEU][hapmap]
rs9496594	0.91[EUR][1000 genomes]
rs967633	0.82[CEU][hapmap]
rs9908	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
2	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:143676400-143682600	Weak transcription	Left Ventricle	heart
4	chr6:143676600-143678000	Weak transcription	Liver	Liver
5	chr6:143676800-143678000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:143677000-143678000	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143677800-143678600	Enhancers	Fetal Stomach	stomach

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