Variant report

Variant	rs11758932
Chromosome Location	chr6:143701194-143701195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11751030	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11751506	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752523	0.83[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs11753012	0.83[CEU][hapmap]
rs11753048	0.83[CEU][hapmap]
rs11753058	0.87[CEU][hapmap]
rs11754065	0.83[CEU][hapmap];0.82[GIH][hapmap];0.82[TSI][hapmap]
rs11754096	0.83[CEU][hapmap]
rs11755477	0.82[CEU][hapmap]
rs11757293	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1364651	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1559599	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2161972	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs223607	0.81[ASN][1000 genomes]
rs2303386	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs2328478	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28502112	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35362528	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4895607	0.82[CEU][hapmap]
rs4896632	0.83[CEU][hapmap]
rs4896633	0.83[CEU][hapmap]
rs4896635	0.82[CEU][hapmap]
rs4896636	0.82[CEU][hapmap]
rs4896637	0.83[CEU][hapmap]
rs4896639	0.82[CEU][hapmap]
rs4896650	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6924104	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6937858	0.88[CEU][hapmap]
rs73000182	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376741	0.82[CEU][hapmap]
rs9390074	0.83[CEU][hapmap]
rs9390075	0.83[CEU][hapmap]
rs9390076	0.83[CEU][hapmap]
rs9399439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403478	0.80[CEU][hapmap]
rs9403485	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap]
rs9403486	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap]
rs9496561	0.83[CEU][hapmap]
rs9496594	0.86[EUR][1000 genomes]
rs967633	0.83[CEU][hapmap]
rs9908	0.94[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11758932	SYCE2	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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