Variant report

Variant	rs28502112
Chromosome Location	chr6:143652393-143652394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143646794..143649528-chr6:143650260..143652968,2	K562	blood:

Variant related genes	Relation type
ENSG00000216642	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11751030	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11751506	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11757293	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11758932	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1364651	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1559599	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2328478	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35362528	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896650	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924104	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73000182	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399439	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399440	0.91[ASN][1000 genomes]
rs9403485	0.88[EUR][1000 genomes]
rs9403486	0.88[EUR][1000 genomes]
rs9496594	0.88[EUR][1000 genomes]
rs9908	0.89[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
2	chr6:143643800-143653600	Weak transcription	Ovary	ovary
3	chr6:143643800-143661200	Weak transcription	Aorta	Aorta
4	chr6:143645000-143683200	Weak transcription	Pancreas	Pancrea
5	chr6:143645200-143656800	Weak transcription	Psoas Muscle	Psoas
6	chr6:143645800-143653600	Weak transcription	Fetal Stomach	stomach
7	chr6:143645800-143655600	Weak transcription	Fetal Brain Female	brain
8	chr6:143646000-143664000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:143647200-143654200	Weak transcription	HepG2	liver
10	chr6:143647200-143657400	Weak transcription	NHLF	lung
11	chr6:143647400-143654000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:143647400-143658200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143647600-143654000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:143648600-143654200	Weak transcription	Liver	Liver
15	chr6:143649400-143652400	Enhancers	NHEK	skin
16	chr6:143650400-143654800	Weak transcription	Fetal Intestine Large	intestine
17	chr6:143650600-143653200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:143650800-143652600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:143650800-143657200	Weak transcription	NH-A	brain
20	chr6:143650800-143657400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:143650800-143657400	Weak transcription	NHDF-Ad	bronchial
22	chr6:143652200-143653400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:143652200-143653400	Weak transcription	HMEC	breast
24	chr6:143652200-143653600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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