Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1111809	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11752326	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13200093	0.85[EUR][1000 genomes]
rs13213543	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13216473	1.00[CEU][hapmap]
rs13216871	0.80[CEU][hapmap]
rs1338704	0.89[CEU][hapmap];0.84[AMR][1000 genomes]
rs1338705	0.89[CEU][hapmap];0.86[AMR][1000 genomes]
rs1572675	0.85[EUR][1000 genomes]
rs17074550	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2050719	0.84[AMR][1000 genomes]
rs6932709	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7768827	0.88[AMR][1000 genomes]
rs7769009	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9373439	0.85[EUR][1000 genomes]
rs9390263	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9390269	0.85[EUR][1000 genomes]
rs9399523	0.85[EUR][1000 genomes]
rs9399524	0.85[EUR][1000 genomes]
rs9399525	0.85[EUR][1000 genomes]
rs9403645	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9403652	0.85[EUR][1000 genomes]
rs9403653	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145274200-145280000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:145274400-145279600	Enhancers	Osteobl	bone
3	chr6:145274600-145279000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:145274800-145278600	Enhancers	NH-A	brain
5	chr6:145275000-145280000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:145275800-145278400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:145275800-145282600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:145276000-145278200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:145277000-145278400	Enhancers	A549	lung

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