Variant report

Variant	rs7768827
Chromosome Location	chr6:145271827-145271828
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1011291	0.94[EUR][1000 genomes]
rs1111809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155384	0.88[AMR][1000 genomes]
rs11752326	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11969748	0.86[ASN][1000 genomes]
rs12175554	0.94[EUR][1000 genomes]
rs13194942	0.80[EUR][1000 genomes]
rs13200093	0.91[EUR][1000 genomes]
rs13213543	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13216473	0.92[EUR][1000 genomes]
rs1338704	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338705	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1416297	0.80[EUR][1000 genomes]
rs1572675	0.91[EUR][1000 genomes]
rs17074550	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050719	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2185145	0.80[EUR][1000 genomes]
rs2328623	0.94[EUR][1000 genomes]
rs4323328	0.81[AMR][1000 genomes]
rs4487599	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896762	0.82[ASN][1000 genomes]
rs57337295	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6570662	0.81[EUR][1000 genomes]
rs6570663	0.80[EUR][1000 genomes]
rs6932709	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7769009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769065	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7773947	0.80[EUR][1000 genomes]
rs9322016	0.94[EUR][1000 genomes]
rs9322017	0.94[EUR][1000 genomes]
rs9373434	0.81[AMR][1000 genomes]
rs9373439	0.91[EUR][1000 genomes]
rs9373441	0.94[EUR][1000 genomes]
rs9376878	0.80[EUR][1000 genomes]
rs9376883	0.92[EUR][1000 genomes]
rs9376884	0.94[EUR][1000 genomes]
rs9376885	0.94[EUR][1000 genomes]
rs9376886	0.94[EUR][1000 genomes]
rs9376887	0.94[EUR][1000 genomes]
rs9386096	0.94[EUR][1000 genomes]
rs9386097	0.94[EUR][1000 genomes]
rs9390257	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9390263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390268	0.94[EUR][1000 genomes]
rs9390269	0.91[EUR][1000 genomes]
rs9390270	0.91[EUR][1000 genomes]
rs9390271	0.94[EUR][1000 genomes]
rs9390272	0.84[EUR][1000 genomes]
rs9399523	0.91[EUR][1000 genomes]
rs9399524	0.91[EUR][1000 genomes]
rs9399525	0.91[EUR][1000 genomes]
rs9399526	0.94[EUR][1000 genomes]
rs9403631	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403633	0.85[ASN][1000 genomes]
rs9403634	0.85[ASN][1000 genomes]
rs9403645	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403649	0.94[EUR][1000 genomes]
rs9403650	0.94[EUR][1000 genomes]
rs9403652	0.91[EUR][1000 genomes]
rs9403653	0.90[EUR][1000 genomes]
rs9403655	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145271800-145274200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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