Variant report

Variant	rs9390257
Chromosome Location	chr6:145225810-145225811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145219914..145222376-chr6:145224376..145227096,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1111809	0.81[AMR][1000 genomes]
rs11969748	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12174209	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13195749	0.96[ASN][1000 genomes]
rs13210332	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1338704	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1338705	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17074550	0.81[AMR][1000 genomes]
rs2050719	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35285375	0.85[EUR][1000 genomes]
rs35946718	0.85[EUR][1000 genomes]
rs4323328	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4487599	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4896762	0.92[ASN][1000 genomes]
rs57337295	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6570656	0.88[EUR][1000 genomes]
rs6913165	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71547172	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7768827	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7769009	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7769065	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9285505	0.99[EUR][1000 genomes]
rs9322003	0.99[EUR][1000 genomes]
rs9322004	0.99[EUR][1000 genomes]
rs9322005	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9373433	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9373434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376869	0.91[EUR][1000 genomes]
rs9376874	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9386089	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390243	0.89[EUR][1000 genomes]
rs9390251	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9390252	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9390253	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9390254	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9390263	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9399514	0.91[EUR][1000 genomes]
rs9399519	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9399520	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9403621	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9403627	0.99[EUR][1000 genomes]
rs9403628	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9403629	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9403631	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403633	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9403634	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9497120	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9497121	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9497132	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145223400-145227000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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