Variant report

Variant	rs13210332
Chromosome Location	chr6:145244816-145244817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UTRN-3	chr6:145244723-145244890	NONHSAT115388

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11969748	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12174209	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13195749	0.82[ASN][1000 genomes]
rs1338704	0.90[ASN][1000 genomes]
rs1338705	0.90[ASN][1000 genomes]
rs2050719	0.89[ASN][1000 genomes]
rs35285375	0.83[EUR][1000 genomes]
rs35946718	0.83[EUR][1000 genomes]
rs4323328	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4487599	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4896762	0.86[ASN][1000 genomes]
rs57337295	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570656	0.85[EUR][1000 genomes]
rs6913165	0.95[EUR][1000 genomes]
rs71547172	0.85[EUR][1000 genomes]
rs7769065	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9285505	0.96[EUR][1000 genomes]
rs9322003	0.96[EUR][1000 genomes]
rs9322004	0.96[EUR][1000 genomes]
rs9322005	0.95[EUR][1000 genomes]
rs9373433	0.95[EUR][1000 genomes]
rs9373434	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9376869	0.88[EUR][1000 genomes]
rs9376874	0.95[EUR][1000 genomes]
rs9386089	0.95[EUR][1000 genomes]
rs9390243	0.86[EUR][1000 genomes]
rs9390251	0.95[EUR][1000 genomes]
rs9390252	0.95[EUR][1000 genomes]
rs9390253	0.95[EUR][1000 genomes]
rs9390254	0.92[EUR][1000 genomes]
rs9390257	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399514	0.88[EUR][1000 genomes]
rs9399519	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9399520	0.95[EUR][1000 genomes]
rs9403621	0.91[EUR][1000 genomes]
rs9403627	0.96[EUR][1000 genomes]
rs9403628	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9403629	0.95[EUR][1000 genomes]
rs9403631	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403633	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9403634	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9497120	0.96[EUR][1000 genomes]
rs9497121	0.96[EUR][1000 genomes]
rs9497132	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145243800-145245800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:145243800-145246000	Weak transcription	Adipose Nuclei	Adipose
3	chr6:145244200-145246200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:145244400-145246000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:145244600-145246800	Active TSS	HUES6 Cell Line	embryonic stem cell

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