Variant report

Variant	rs4487599
Chromosome Location	chr6:145242800-145242801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1111809	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11969748	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12174209	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13195749	0.90[ASN][1000 genomes]
rs13210332	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1338704	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1338705	0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17074550	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2050719	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35285375	0.86[EUR][1000 genomes]
rs35946718	0.86[EUR][1000 genomes]
rs4323328	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4896762	0.93[ASN][1000 genomes]
rs57337295	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6570656	0.89[EUR][1000 genomes]
rs6913165	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71547172	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7768827	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7769009	0.82[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7769065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9285505	1.00[EUR][1000 genomes]
rs9322003	1.00[EUR][1000 genomes]
rs9322004	1.00[EUR][1000 genomes]
rs9322005	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9373433	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9373434	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376869	0.92[EUR][1000 genomes]
rs9376874	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9386089	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390243	0.90[EUR][1000 genomes]
rs9390251	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390252	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390253	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390254	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390257	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9390263	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9399514	0.92[EUR][1000 genomes]
rs9399519	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9399520	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9403621	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9403627	1.00[EUR][1000 genomes]
rs9403628	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403629	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403631	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403633	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403634	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497120	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497121	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9497132	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145234400-145243400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:145240400-145244400	Enhancers	Liver	Liver
3	chr6:145240600-145243600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:145241600-145242800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:145241600-145243400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:145241600-145243400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:145241600-145243800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:145241600-145244200	Enhancers	NHDF-Ad	bronchial
9	chr6:145241800-145242800	Enhancers	Stomach Mucosa	stomach
10	chr6:145241800-145243000	Enhancers	Fetal Intestine Small	intestine
11	chr6:145241800-145243800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:145241800-145243800	Enhancers	Pancreas	Pancrea
13	chr6:145241800-145244200	Enhancers	A549	lung
14	chr6:145242000-145243200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:145242000-145243400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:145242000-145243400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:145242200-145243200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:145242200-145243600	Weak transcription	HSMMtube	muscle
19	chr6:145242400-145243800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:145242400-145243800	Enhancers	HepG2	liver
21	chr6:145242600-145243000	Enhancers	Fetal Intestine Large	intestine
22	chr6:145242600-145243400	Weak transcription	Gastric	stomach
23	chr6:145242600-145243800	Enhancers	Adipose Nuclei	Adipose
24	chr6:145242600-145243800	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:145242800-145243000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:145242800-145243600	Weak transcription	Stomach Mucosa	stomach

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