Variant report

Variant	rs9376869
Chromosome Location	chr6:145201100-145201101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:145199350..145203488-chr6:145205369..145208032,3	K562	blood:
2	chr6:145199307..145201397-chr6:145215115..145217715,2	MCF-7	breast:
3	chr6:145195775..145198771-chr6:145199592..145202837,3	K562	blood:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11969748	0.91[EUR][1000 genomes]
rs12174209	0.87[EUR][1000 genomes]
rs13195905	0.85[YRI][hapmap]
rs13205266	1.00[ASW][hapmap]
rs13210332	0.88[EUR][1000 genomes]
rs13216473	1.00[ASW][hapmap]
rs4323328	0.89[EUR][1000 genomes]
rs4487599	0.92[EUR][1000 genomes]
rs57337295	0.90[EUR][1000 genomes]
rs6570656	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6913165	0.91[EUR][1000 genomes]
rs71547172	0.84[EUR][1000 genomes]
rs7742815	0.85[ASN][1000 genomes]
rs7742893	0.85[ASN][1000 genomes]
rs7743204	0.85[ASN][1000 genomes]
rs7762951	0.85[ASN][1000 genomes]
rs7769065	0.92[EUR][1000 genomes]
rs9285505	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322003	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322004	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9322005	0.91[EUR][1000 genomes]
rs9373428	0.82[YRI][hapmap]
rs9373433	0.91[EUR][1000 genomes]
rs9373434	0.91[EUR][1000 genomes]
rs9376858	0.85[YRI][hapmap]
rs9376874	0.91[EUR][1000 genomes]
rs9386089	0.91[EUR][1000 genomes]
rs9390243	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9390251	0.91[EUR][1000 genomes]
rs9390252	0.91[EUR][1000 genomes]
rs9390253	0.91[EUR][1000 genomes]
rs9390254	0.88[EUR][1000 genomes]
rs9390257	0.91[EUR][1000 genomes]
rs9399514	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9399519	0.92[EUR][1000 genomes]
rs9399520	0.91[EUR][1000 genomes]
rs9403600	0.85[YRI][hapmap]
rs9403610	0.87[YRI][hapmap]
rs9403621	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9403622	0.88[ASN][1000 genomes]
rs9403627	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9403628	0.92[EUR][1000 genomes]
rs9403629	0.91[EUR][1000 genomes]
rs9403631	0.92[EUR][1000 genomes]
rs9403633	0.91[EUR][1000 genomes]
rs9403634	0.90[EUR][1000 genomes]
rs9497120	0.92[EUR][1000 genomes]
rs9497121	0.92[EUR][1000 genomes]
rs9497132	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830833	chr6:145001310-145201143	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv464070	chr6:145184504-145214952	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604823	chr6:145184504-145214952	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv432966	chr6:145191307-145201307	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145199400-145201400	Enhancers	Fetal Heart	heart
2	chr6:145200600-145201200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:145200600-145201200	Enhancers	A549	lung
4	chr6:145200800-145201400	Enhancers	HSMMtube	muscle

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