Variant report

Variant	rs9497132
Chromosome Location	chr6:145251226-145251227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11969748	0.89[EUR][1000 genomes]
rs13210332	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4323328	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4487599	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57337295	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6913165	0.89[EUR][1000 genomes]
rs7769065	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9285505	0.88[EUR][1000 genomes]
rs9322003	0.88[EUR][1000 genomes]
rs9322004	0.88[EUR][1000 genomes]
rs9322005	0.89[EUR][1000 genomes]
rs9373433	0.89[EUR][1000 genomes]
rs9373434	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9376869	0.81[EUR][1000 genomes]
rs9376874	0.89[EUR][1000 genomes]
rs9386089	0.89[EUR][1000 genomes]
rs9390251	0.89[EUR][1000 genomes]
rs9390252	0.89[EUR][1000 genomes]
rs9390253	0.89[EUR][1000 genomes]
rs9390254	0.86[EUR][1000 genomes]
rs9390257	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9399514	0.81[EUR][1000 genomes]
rs9399519	0.88[EUR][1000 genomes]
rs9399520	0.89[EUR][1000 genomes]
rs9403621	0.84[EUR][1000 genomes]
rs9403627	0.88[EUR][1000 genomes]
rs9403628	0.88[EUR][1000 genomes]
rs9403629	0.89[EUR][1000 genomes]
rs9403631	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9403633	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9403634	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9497120	0.88[EUR][1000 genomes]
rs9497121	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145250000-145251400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:145251000-145257600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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