Variant report

Variant	rs7769009
Chromosome Location	chr6:145272028-145272029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145271887..145272387-chr9:130213431..130213993,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000148356	Chromatin interaction
ENSG00000197958	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1011291	0.93[EUR][1000 genomes]
rs1111809	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155384	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11752326	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11969748	0.86[ASN][1000 genomes]
rs12175554	0.93[EUR][1000 genomes]
rs13194942	0.81[EUR][1000 genomes]
rs13200093	0.90[EUR][1000 genomes]
rs13213543	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13216473	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13216871	0.83[CEU][hapmap]
rs1338704	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1338705	0.91[CEU][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1416297	0.81[EUR][1000 genomes]
rs1572675	0.90[EUR][1000 genomes]
rs17074550	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050719	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2185145	0.81[EUR][1000 genomes]
rs2328623	0.93[EUR][1000 genomes]
rs4323328	0.81[AMR][1000 genomes]
rs4487599	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4896762	0.82[ASN][1000 genomes]
rs57337295	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6570662	0.82[EUR][1000 genomes]
rs6570663	0.81[EUR][1000 genomes]
rs6932709	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7768827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769065	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7773947	0.81[EUR][1000 genomes]
rs9322016	0.93[EUR][1000 genomes]
rs9322017	0.93[EUR][1000 genomes]
rs9373434	0.81[AMR][1000 genomes]
rs9373439	0.90[EUR][1000 genomes]
rs9373441	0.93[EUR][1000 genomes]
rs9376878	0.81[EUR][1000 genomes]
rs9376883	0.94[EUR][1000 genomes]
rs9376884	0.93[EUR][1000 genomes]
rs9376885	0.93[EUR][1000 genomes]
rs9376886	0.93[EUR][1000 genomes]
rs9376887	0.93[EUR][1000 genomes]
rs9386096	0.93[EUR][1000 genomes]
rs9386097	0.93[EUR][1000 genomes]
rs9390257	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9390263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390268	0.93[EUR][1000 genomes]
rs9390269	0.90[EUR][1000 genomes]
rs9390270	0.90[EUR][1000 genomes]
rs9390271	0.93[EUR][1000 genomes]
rs9390272	0.83[EUR][1000 genomes]
rs9399523	0.90[EUR][1000 genomes]
rs9399524	0.90[EUR][1000 genomes]
rs9399525	0.90[EUR][1000 genomes]
rs9399526	0.93[EUR][1000 genomes]
rs9403631	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9403633	0.85[ASN][1000 genomes]
rs9403634	0.85[ASN][1000 genomes]
rs9403645	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9403649	0.93[EUR][1000 genomes]
rs9403650	0.93[EUR][1000 genomes]
rs9403652	0.90[EUR][1000 genomes]
rs9403653	0.89[EUR][1000 genomes]
rs9403655	0.93[EUR][1000 genomes]
rs9497135	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145271800-145274200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:145272000-145272200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr6:145272000-145272200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:145272000-145272200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:145272000-145273400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:145272000-145274200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr6:145272000-145274200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:145272000-145275400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:145272000-145275400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:145272000-145275800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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