Variant report

Variant	rs9390272
Chromosome Location	chr6:145318492-145318493
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:145316064..145318663-chr6:145319154..145322013,2	MCF-7	breast:
2	chr6:145311761..145313363-chr6:145317514..145320282,2	MCF-7	breast:
3	chr6:145316794..145319554-chr6:145320560..145322113,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011291	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1111809	0.81[EUR][1000 genomes]
rs12175554	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13213543	0.83[EUR][1000 genomes]
rs13216473	0.91[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs1338704	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs1338705	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs17074550	0.83[EUR][1000 genomes]
rs2050719	0.82[EUR][1000 genomes]
rs2328623	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7768827	0.84[EUR][1000 genomes]
rs7769009	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs9322016	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9322017	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9373441	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9376883	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376884	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9376885	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9376886	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376887	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9376888	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9386096	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9386097	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9390263	0.83[EUR][1000 genomes]
rs9390268	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390270	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9390271	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399526	0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9399527	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9403645	0.83[EUR][1000 genomes]
rs9403649	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403650	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9403655	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145315400-145320200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr6:145315400-145320200	Weak transcription	NHDF-Ad	bronchial
3	chr6:145317000-145320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links