Variant report

Variant	rs11155617
Chromosome Location	chr6:149400864-149400865
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:149364667..149368591-chr6:149398600..149403391,5	MCF-7	breast:
2	chr6:149376456..149387248-chr6:149393069..149406749,44	MCF-7	breast:
3	chr6:149348124..149349985-chr6:149399476..149401160,2	MCF-7	breast:
4	chr6:149399566..149401649-chr6:149452459..149454867,2	MCF-7	breast:
5	chr6:149399709..149402380-chr6:149772394..149774498,2	K562	blood:
6	chr6:149400077..149402541-chr6:149553088..149555803,2	MCF-7	breast:
7	chr6:149353519..149354505-chr6:149400647..149401590,2	MCF-7	breast:
8	chr6:149398184..149404330-chr6:149748783..149757211,17	MCF-7	breast:
9	chr6:149400690..149404463-chr6:149557705..149560765,3	MCF-7	breast:
10	chr6:149340644..149342659-chr6:149400805..149403044,2	MCF-7	breast:
11	chr6:149349779..149350643-chr6:149400657..149401185,2	MCF-7	breast:
12	chr6:149350906..149355297-chr6:149396132..149403444,27	MCF-7	breast:
13	chr6:149068413..149070545-chr6:149400002..149402666,2	MCF-7	breast:
14	chr6:149400434..149403081-chr6:149638090..149639793,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction
ENSG00000111962	Chromatin interaction
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10452661	1.00[CEU][hapmap]
rs11155614	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs17079591	1.00[CEU][hapmap]
rs17081135	1.00[CEU][hapmap]
rs3798593	1.00[CEU][hapmap];0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs57067744	0.86[EUR][1000 genomes]
rs57955571	1.00[EUR][1000 genomes]
rs58050239	1.00[AMR][1000 genomes]
rs58982760	1.00[AMR][1000 genomes]
rs59628515	1.00[AMR][1000 genomes]
rs6900115	1.00[CEU][hapmap]
rs6903661	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs7765192	1.00[CEU][hapmap]
rs9373584	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs9373585	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9377189	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9386242	1.00[EUR][1000 genomes]
rs9386243	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9399680	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes]
rs9404017	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs9485341	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149362800-149401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:149382800-149401400	Weak transcription	Esophagus	oesophagus
3	chr6:149385200-149404000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:149387400-149401400	Weak transcription	Lung	lung
5	chr6:149387400-149404200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:149387600-149401800	Weak transcription	Brain Substantia Nigra	brain
7	chr6:149387800-149401000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr6:149387800-149401000	Weak transcription	Brain Anterior Caudate	brain
9	chr6:149387800-149401000	Weak transcription	Fetal Lung	lung
10	chr6:149395000-149415000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:149395600-149401200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:149395800-149401000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:149396400-149401200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:149396800-149403400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:149397200-149401400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:149397400-149402200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:149397400-149403400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:149397400-149403600	Weak transcription	Primary T cells from cord blood	blood
19	chr6:149397600-149403600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:149397800-149401600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:149397800-149407600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:149398600-149401600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:149398600-149403200	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr6:149398800-149401000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:149398800-149402800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr6:149398800-149403800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:149399000-149401000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:149399000-149401000	Weak transcription	Stomach Mucosa	stomach
29	chr6:149399000-149401000	Weak transcription	A549	lung
30	chr6:149399000-149401000	Weak transcription	NH-A	brain
31	chr6:149399000-149401200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:149399000-149401200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:149399000-149402400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:149399000-149403200	Weak transcription	Primary B cells from cord blood	blood
35	chr6:149399000-149403200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:149399000-149403200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:149399000-149403600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:149399200-149401200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:149399200-149401200	Weak transcription	Liver	Liver
40	chr6:149399200-149415000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:149399800-149401000	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:149399800-149402200	Enhancers	Right Atrium	heart
43	chr6:149399800-149403000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:149400000-149402800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:149400200-149401000	Enhancers	GM12878-XiMat	blood
46	chr6:149400200-149401200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:149400200-149401400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:149400200-149401600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:149400200-149402200	Enhancers	Ovary	ovary
50	chr6:149400200-149403000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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