Variant report

Variant	rs6900115
Chromosome Location	chr6:149291809-149291810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149289727..149291307-chr6:149291721..149293253,2	MCF-7	breast:
2	chr6:149291179..149293538-chr6:149298228..149299764,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11155617	1.00[CEU][hapmap]
rs17079591	1.00[CEU][hapmap]
rs17080690	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17080800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17080807	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17081135	1.00[CEU][hapmap]
rs3798593	1.00[CEU][hapmap]
rs57924068	1.00[EUR][1000 genomes]
rs6903661	1.00[CEU][hapmap]
rs73605019	1.00[EUR][1000 genomes]
rs7765192	1.00[CEU][hapmap]
rs9373584	1.00[CEU][hapmap]
rs9373585	1.00[CEU][hapmap]
rs9377189	1.00[CEU][hapmap]
rs9399680	1.00[CEU][hapmap]
rs9485341	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6900115	NR2F2	trans	lymphoblastoid	seeQTL

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149256600-149292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149274000-149293800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:149276400-149308400	Weak transcription	Lung	lung
4	chr6:149278000-149310600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:149284000-149293400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:149284600-149293400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:149284600-149293600	Weak transcription	Esophagus	oesophagus
8	chr6:149284600-149293600	Weak transcription	Ovary	ovary
9	chr6:149285800-149292800	Weak transcription	Spleen	Spleen
10	chr6:149286600-149292800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:149286600-149300000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:149286800-149320600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:149287600-149292800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:149288000-149295200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:149288200-149294200	Enhancers	Fetal Muscle Leg	muscle
16	chr6:149288400-149292000	Bivalent Enhancer	HepG2	liver
17	chr6:149288600-149292800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:149289000-149293400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:149289200-149292800	Enhancers	NH-A	brain
20	chr6:149289200-149292800	Enhancers	NHDF-Ad	bronchial
21	chr6:149289200-149292800	Enhancers	Osteobl	bone
22	chr6:149289200-149314600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:149289400-149292000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:149289600-149292800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:149290400-149292800	Weak transcription	Thymus	Thymus
26	chr6:149290400-149294000	Enhancers	Fetal Muscle Trunk	muscle
27	chr6:149290600-149292000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr6:149290600-149292800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:149290800-149292200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:149290800-149292200	Weak transcription	Aorta	Aorta
31	chr6:149290800-149292800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:149290800-149294000	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:149290800-149297200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr6:149290800-149300400	Weak transcription	Fetal Lung	lung
35	chr6:149290800-149311800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr6:149291000-149292000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:149291000-149292400	Enhancers	NHLF	lung
38	chr6:149291200-149292000	Strong transcription	H9 Cell Line	embryonic stem cell
39	chr6:149291200-149292000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
40	chr6:149291200-149292000	Enhancers	Right Atrium	heart
41	chr6:149291200-149293200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr6:149291400-149292000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:149291400-149292000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr6:149291400-149292400	Strong transcription	Primary B cells from peripheral blood	blood
45	chr6:149291400-149292600	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr6:149291400-149292600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:149291400-149293400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr6:149291400-149304200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:149291600-149292400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr6:149291600-149292400	Strong transcription	Fetal Stomach	stomach

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