Variant report

Variant	rs7765192
Chromosome Location	chr6:149272308-149272309
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149267326..149269111-chr6:149270780..149273295,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11155617	1.00[CEU][hapmap]
rs17079591	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17081135	1.00[CEU][hapmap]
rs3798593	1.00[CEU][hapmap]
rs6900115	1.00[CEU][hapmap]
rs6903661	1.00[CEU][hapmap]
rs6921380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7752857	1.00[EUR][1000 genomes]
rs7758814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9373584	1.00[CEU][hapmap]
rs9373585	1.00[CEU][hapmap]
rs9377189	1.00[CEU][hapmap]
rs9399680	1.00[CEU][hapmap]
rs9485341	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149256600-149292600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:149257000-149285000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:149257600-149276200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:149261400-149285000	Weak transcription	Spleen	Spleen
5	chr6:149262000-149289600	Weak transcription	Aorta	Aorta
6	chr6:149262200-149276200	Weak transcription	Pancreas	Pancrea
7	chr6:149263400-149275400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:149263400-149275600	Weak transcription	Primary B cells from cord blood	blood
9	chr6:149263400-149275600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:149263400-149275600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149266800-149276200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:149267000-149276400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:149267200-149273200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:149267200-149273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:149269200-149276600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:149269400-149272400	Weak transcription	Ovary	ovary
17	chr6:149269400-149272600	Weak transcription	Fetal Lung	lung
18	chr6:149269400-149272600	Weak transcription	Dnd41	blood
19	chr6:149269400-149273000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:149269400-149273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:149269400-149273200	Weak transcription	Fetal Kidney	kidney
22	chr6:149269400-149273200	Weak transcription	Fetal Stomach	stomach
23	chr6:149269400-149276000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:149269400-149277600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:149269400-149288800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:149269400-149291400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:149269600-149273200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:149269600-149273200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:149269600-149275800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:149269600-149276400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:149269600-149277800	Weak transcription	Brain Substantia Nigra	brain
32	chr6:149270000-149273200	Weak transcription	Stomach Mucosa	stomach
33	chr6:149270600-149274200	Enhancers	Rectal Smooth Muscle	rectum
34	chr6:149271200-149275600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:149271200-149276600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:149271200-149288600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:149271400-149273400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:149271400-149275600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:149271400-149276000	Weak transcription	Right Atrium	heart
40	chr6:149271600-149275600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:149271600-149276000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:149271600-149276000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:149271600-149277600	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr6:149271600-149285600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr6:149271800-149273000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:149271800-149273200	Weak transcription	Fetal Brain Male	brain
47	chr6:149271800-149275400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:149271800-149275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:149271800-149276000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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