Variant report

Variant	rs7752857
Chromosome Location	chr6:149243278-149243279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17079591	1.00[EUR][1000 genomes]
rs6921380	1.00[EUR][1000 genomes]
rs7758814	1.00[EUR][1000 genomes]
rs7765192	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149209000-149247600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr6:149226600-149252800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:149226600-149255600	Weak transcription	Ovary	ovary
5	chr6:149230800-149244600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:149231000-149244200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:149231000-149245400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:149234200-149244600	Weak transcription	Fetal Heart	heart
9	chr6:149234200-149245800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr6:149234400-149245000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:149235000-149244000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:149235400-149253000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:149235800-149245400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:149237000-149244600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:149237400-149244400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:149237600-149245000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr6:149238000-149244800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:149238200-149244200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:149238200-149245400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:149238400-149252600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:149238800-149245200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:149239400-149244600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:149239600-149245600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:149240600-149244000	Weak transcription	Lung	lung
25	chr6:149240600-149245200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:149240600-149245600	Weak transcription	Fetal Stomach	stomach
27	chr6:149240600-149247000	Weak transcription	Pancreas	Pancrea
28	chr6:149240600-149247200	Weak transcription	Dnd41	blood
29	chr6:149240600-149254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
31	chr6:149242800-149243600	Strong transcription	Primary B cells from cord blood	blood
32	chr6:149243000-149245400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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