Variant report

Variant	rs6921380
Chromosome Location	chr6:149253249-149253250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17079591	1.00[EUR][1000 genomes]
rs7752857	1.00[EUR][1000 genomes]
rs7758814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7765192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149211600-149255400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:149226600-149255600	Weak transcription	Ovary	ovary
3	chr6:149240600-149254600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:149240600-149256400	Weak transcription	Aorta	Aorta
5	chr6:149243600-149262600	Weak transcription	Primary B cells from cord blood	blood
6	chr6:149246000-149255600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:149246000-149262600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:149246800-149262400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr6:149247200-149258800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:149247200-149259000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr6:149247800-149254600	Weak transcription	Psoas Muscle	Psoas
12	chr6:149247800-149268800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:149248000-149254600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149248000-149254600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:149248400-149255400	Weak transcription	Fetal Heart	heart
16	chr6:149250400-149253800	Weak transcription	HSMMtube	muscle
17	chr6:149252000-149254600	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:149252200-149253400	Enhancers	Fetal Stomach	stomach
19	chr6:149252400-149254800	Weak transcription	Fetal Brain Male	brain
20	chr6:149252600-149253400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:149252800-149257600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:149253000-149253800	Enhancers	Primary B cells from peripheral blood	blood
23	chr6:149253000-149255400	Weak transcription	Fetal Lung	lung
24	chr6:149253200-149253600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links