Variant report

Variant	rs11155628
Chromosome Location	chr6:149492684-149492685
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11155630	0.88[EUR][1000 genomes]
rs12195850	0.83[EUR][1000 genomes]
rs12200379	0.88[EUR][1000 genomes]
rs12213636	0.88[EUR][1000 genomes]
rs58638760	0.84[EUR][1000 genomes]
rs73600091	0.87[EUR][1000 genomes]
rs7751665	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7776204	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149489800-149492800	Enhancers	Liver	Liver
2	chr6:149489800-149492800	Enhancers	GM12878-XiMat	blood
3	chr6:149490600-149492800	Enhancers	K562	blood
4	chr6:149490600-149495800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:149490800-149495800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:149491000-149493200	Enhancers	Fetal Lung	lung
7	chr6:149491400-149496000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:149492200-149492800	Enhancers	Fetal Heart	heart
9	chr6:149492200-149503600	Weak transcription	Right Atrium	heart
10	chr6:149492400-149492800	Enhancers	Colon Smooth Muscle	Colon
11	chr6:149492400-149494000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:149492600-149492800	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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