Variant report
| Variant | rs58638760 |
|---|---|
| Chromosome Location | chr6:149497463-149497464 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:149494988..149497672-chr6:149502108..149504370,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11155626 | 0.88[ASN][1000 genomes] |
| rs11155628 | 0.84[EUR][1000 genomes] |
| rs11155630 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12190751 | 0.88[ASN][1000 genomes] |
| rs12195850 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12196284 | 0.88[ASN][1000 genomes] |
| rs12196893 | 0.88[ASN][1000 genomes] |
| rs12200379 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12210317 | 0.88[ASN][1000 genomes] |
| rs12213636 | 0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4073251 | 0.88[ASN][1000 genomes] |
| rs4470876 | 0.81[ASN][1000 genomes] |
| rs59587169 | 0.82[AFR][1000 genomes] |
| rs6900527 | 0.84[ASN][1000 genomes] |
| rs6909527 | 0.88[ASN][1000 genomes] |
| rs72989962 | 0.88[ASN][1000 genomes] |
| rs72989978 | 0.88[ASN][1000 genomes] |
| rs72993821 | 0.88[ASN][1000 genomes] |
| rs73004281 | 0.88[ASN][1000 genomes] |
| rs73600091 | 0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs73779024 | 0.88[ASN][1000 genomes] |
| rs7743674 | 0.88[ASN][1000 genomes] |
| rs7751665 | 0.87[EUR][1000 genomes] |
| rs7774537 | 0.81[ASN][1000 genomes] |
| rs7776204 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9390657 | 0.88[ASN][1000 genomes] |
| rs9918331 | 0.88[ASN][1000 genomes] |
| rs9918332 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032319 | chr6:149271433-149550525 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv538470 | chr6:149271433-149550525 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024776 | chr6:149398652-149654593 | Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:149492200-149503600 | Weak transcription | Right Atrium | heart |
| 2 | chr6:149492800-149497600 | Weak transcription | Liver | Liver |
