Variant report

Variant	rs7776204
Chromosome Location	chr6:149498654-149498655
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:149497938-149498772	HepG2	liver:	n/a	n/a
2	FOXA1	chr6:149497954-149498716	HepG2	liver:	n/a	n/a
3	NFIC	chr6:149497965-149498684	HepG2	liver:	n/a	n/a
4	FOXA1	chr6:149498075-149498722	HepG2	liver:	n/a	n/a
5	FOXA1	chr6:149498059-149498696	HepG2	liver:	n/a	n/a
6	FOXA2	chr6:149497498-149498960	HepG2	liver:	n/a	n/a
7	MYBL2	chr6:149497920-149498744	HepG2	liver:	n/a	n/a
8	NR2F2	chr6:149497988-149498712	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000263481	TF binding region

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10457075	1.00[JPT][hapmap]
rs10457839	1.00[JPT][hapmap]
rs10457842	1.00[JPT][hapmap]
rs10499251	1.00[JPT][hapmap]
rs11155626	0.96[ASN][1000 genomes]
rs11155628	0.88[EUR][1000 genomes]
rs11155630	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12153925	1.00[JPT][hapmap]
rs12190751	0.96[ASN][1000 genomes]
rs12195850	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12196893	0.96[ASN][1000 genomes]
rs12197040	1.00[JPT][hapmap]
rs12200379	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200909	1.00[JPT][hapmap]
rs12202158	1.00[JPT][hapmap]
rs12206419	1.00[JPT][hapmap]
rs12210317	0.96[ASN][1000 genomes]
rs12213636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13217006	1.00[JPT][hapmap]
rs17669546	1.00[JPT][hapmap]
rs1890610	1.00[JPT][hapmap]
rs1890612	1.00[JPT][hapmap]
rs1934221	1.00[JPT][hapmap]
rs1934222	1.00[JPT][hapmap]
rs2153251	1.00[JPT][hapmap]
rs2153252	1.00[JPT][hapmap]
rs2185250	1.00[JPT][hapmap]
rs3949414	1.00[JPT][hapmap]
rs4073251	0.96[ASN][1000 genomes]
rs4336467	1.00[JPT][hapmap]
rs4454159	1.00[JPT][hapmap]
rs4470876	0.88[ASN][1000 genomes]
rs58638760	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6570923	1.00[JPT][hapmap]
rs6570924	1.00[JPT][hapmap]
rs6570926	1.00[JPT][hapmap]
rs6570927	1.00[JPT][hapmap]
rs6570932	1.00[JPT][hapmap]
rs6900527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6901626	1.00[JPT][hapmap]
rs6909527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6909624	1.00[JPT][hapmap]
rs6914281	1.00[JPT][hapmap]
rs6914318	1.00[JPT][hapmap]
rs6914925	1.00[JPT][hapmap]
rs6917010	1.00[JPT][hapmap]
rs6930713	1.00[JPT][hapmap]
rs6940664	1.00[JPT][hapmap]
rs6940915	1.00[JPT][hapmap]
rs72989962	0.96[ASN][1000 genomes]
rs72989978	0.96[ASN][1000 genomes]
rs72993821	0.96[ASN][1000 genomes]
rs73004281	0.96[ASN][1000 genomes]
rs73600091	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779024	0.96[ASN][1000 genomes]
rs7743674	0.96[ASN][1000 genomes]
rs7751665	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs7762928	1.00[JPT][hapmap]
rs7773409	1.00[JPT][hapmap]
rs7774537	0.88[ASN][1000 genomes]
rs9322165	1.00[JPT][hapmap]
rs9390657	0.96[ASN][1000 genomes]
rs9485353	1.00[JPT][hapmap]
rs9498199	1.00[JPT][hapmap]
rs9498201	1.00[JPT][hapmap]
rs9498202	1.00[JPT][hapmap]
rs9498204	1.00[JPT][hapmap]
rs9498205	1.00[JPT][hapmap]
rs9498207	1.00[JPT][hapmap]
rs9918331	0.96[ASN][1000 genomes]
rs9918332	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3407275	chr6:149498209-149500207	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv2466757	chr6:149498326-149499898	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149492200-149503600	Weak transcription	Right Atrium	heart
2	chr6:149498200-149498800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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