Variant report

Variant	rs9390657
Chromosome Location	chr6:149448858-149448859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149440205..149443227-chr6:149446390..149449238,3	K562	blood:
2	chr6:149433670..149435558-chr6:149447633..149449437,2	MCF-7	breast:
3	chr6:149447328..149451282-chr6:149451738..149453433,3	K562	blood:

Variant related genes	Relation type
ENSG00000219487	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11155624	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11155626	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155630	0.96[ASN][1000 genomes]
rs12189850	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12190751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195850	0.96[ASN][1000 genomes]
rs12196284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196893	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200379	0.96[ASN][1000 genomes]
rs12203266	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203302	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203458	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12205636	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12206852	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12208882	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12208962	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12210317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213636	0.96[ASN][1000 genomes]
rs12216095	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12216166	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35733790	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4073251	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4400235	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4470876	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4537169	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4579380	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57241335	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57369633	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57471912	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58638760	0.88[ASN][1000 genomes]
rs59828569	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6900527	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6909527	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919190	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6919690	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72989962	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989978	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993821	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993840	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73004281	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73004286	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73600091	0.96[ASN][1000 genomes]
rs73779024	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743674	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753909	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7754166	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7758462	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7761635	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7761698	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7762164	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7764138	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7766254	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7768166	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7774537	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776204	0.96[ASN][1000 genomes]
rs9918331	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918332	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149445400-149449400	Weak transcription	GM12878-XiMat	blood
2	chr6:149446800-149449400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149447600-149449000	Enhancers	Dnd41	blood
4	chr6:149447600-149449400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:149447600-149449600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:149447600-149449600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:149447600-149454400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:149447800-149449600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:149447800-149454200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr6:149448000-149449000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:149448000-149449600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr6:149448000-149452600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:149448200-149449400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr6:149448200-149452200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:149448400-149449400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr6:149448400-149449400	Enhancers	K562	blood
17	chr6:149448400-149451200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:149448400-149452400	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:149448400-149452400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:149448600-149449000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:149448600-149449400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:149448600-149450400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:149448600-149450600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:149448800-149449800	Weak transcription	Hela-S3	cervix
25	chr6:149448800-149450200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:149448800-149450400	Weak transcription	Osteobl	bone
27	chr6:149448800-149452000	Enhancers	Primary T cells from cord blood	blood
28	chr6:149448800-149453600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr6:149448800-149454200	Enhancers	Placenta	Placenta

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