Variant report

Variant	rs12206852
Chromosome Location	chr6:149440231-149440232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149425674..149427505-chr6:149439883..149441574,2	MCF-7	breast:
2	chr6:149438403..149440281-chr6:149452330..149454073,2	K562	blood:
3	chr6:149440091..149442908-chr6:149453590..149455859,2	K562	blood:
4	chr6:149434484..149436638-chr6:149440096..149443619,3	MCF-7	breast:
5	chr6:149440205..149443227-chr6:149446390..149449238,3	K562	blood:
6	chr6:149427500..149429551-chr6:149437595..149440317,3	K562	blood:
7	chr6:149438674..149441948-chr6:149450360..149452132,3	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155626	0.84[EUR][1000 genomes]
rs12189850	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190751	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12196284	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12196893	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12203266	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203458	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205636	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12208882	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210317	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12216095	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216166	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073251	0.87[EUR][1000 genomes]
rs4400235	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4470876	0.85[EUR][1000 genomes]
rs4537169	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579380	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57241335	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57369633	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57471912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59828569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900527	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6909527	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6919190	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919690	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989962	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72989978	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72993821	0.87[EUR][1000 genomes]
rs72993840	0.85[EUR][1000 genomes]
rs73004281	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73004286	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779024	0.87[EUR][1000 genomes]
rs7743674	0.87[EUR][1000 genomes]
rs7753909	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754166	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7758462	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7761635	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7764138	0.84[EUR][1000 genomes]
rs7766254	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768166	0.84[EUR][1000 genomes]
rs7772697	0.81[JPT][hapmap]
rs7774537	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9390657	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9918331	0.87[EUR][1000 genomes]
rs9918332	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149433200-149443400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:149433800-149444400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:149436400-149442600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:149437400-149444400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:149438400-149440600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:149439600-149441400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:149440000-149440400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:149440000-149440600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:149440000-149440600	Flanking Active TSS	K562	blood
10	chr6:149440000-149440800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:149440000-149441000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:149440200-149440400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:149440200-149440600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:149440200-149441000	Enhancers	Muscle Satellite Cultured Cells	--

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