Variant report

Variant	rs4073251
Chromosome Location	chr6:149474099-149474100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149468238..149470911-chr6:149471382..149475274,5	K562	blood:
2	chr6:149468297..149470497-chr6:149472232..149475176,2	K562	blood:

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10457075	1.00[JPT][hapmap]
rs10457839	1.00[JPT][hapmap]
rs10457842	1.00[JPT][hapmap]
rs10499251	1.00[JPT][hapmap]
rs11155624	0.88[EUR][1000 genomes]
rs11155626	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155630	0.96[ASN][1000 genomes]
rs12153925	1.00[JPT][hapmap]
rs12189850	0.88[EUR][1000 genomes]
rs12190751	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195850	0.96[ASN][1000 genomes]
rs12196284	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196893	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197040	1.00[JPT][hapmap]
rs12200379	0.96[ASN][1000 genomes]
rs12200909	1.00[JPT][hapmap]
rs12202158	1.00[JPT][hapmap]
rs12203266	0.88[EUR][1000 genomes]
rs12203302	0.88[EUR][1000 genomes]
rs12203458	0.88[EUR][1000 genomes]
rs12205636	0.88[EUR][1000 genomes]
rs12206419	1.00[JPT][hapmap]
rs12206852	0.87[EUR][1000 genomes]
rs12208882	0.88[EUR][1000 genomes]
rs12208962	0.88[EUR][1000 genomes]
rs12210317	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213636	0.96[ASN][1000 genomes]
rs12216095	0.88[EUR][1000 genomes]
rs12216166	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13217006	1.00[JPT][hapmap]
rs17669546	1.00[JPT][hapmap]
rs1890610	1.00[JPT][hapmap]
rs1890612	1.00[JPT][hapmap]
rs1934221	1.00[JPT][hapmap]
rs1934222	1.00[JPT][hapmap]
rs2153251	1.00[JPT][hapmap]
rs2153252	1.00[JPT][hapmap]
rs2185250	1.00[JPT][hapmap]
rs35733790	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3949414	1.00[JPT][hapmap]
rs4243488	0.83[LWK][hapmap]
rs4336467	1.00[JPT][hapmap]
rs4400235	0.88[EUR][1000 genomes]
rs4454159	1.00[JPT][hapmap]
rs4470876	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4537169	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4579380	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57241335	0.88[EUR][1000 genomes]
rs57369633	0.88[EUR][1000 genomes]
rs57471912	0.88[EUR][1000 genomes]
rs58638760	0.88[ASN][1000 genomes]
rs59828569	0.88[EUR][1000 genomes]
rs6570923	1.00[JPT][hapmap]
rs6570924	1.00[JPT][hapmap]
rs6570926	1.00[JPT][hapmap]
rs6570927	1.00[JPT][hapmap]
rs6570932	1.00[JPT][hapmap]
rs6900527	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901626	1.00[JPT][hapmap]
rs6909527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6909624	1.00[JPT][hapmap]
rs6914281	1.00[JPT][hapmap]
rs6914318	1.00[JPT][hapmap]
rs6914925	1.00[JPT][hapmap]
rs6917010	1.00[JPT][hapmap]
rs6919190	0.88[EUR][1000 genomes]
rs6919690	0.88[EUR][1000 genomes]
rs6930713	1.00[JPT][hapmap]
rs6940664	1.00[JPT][hapmap]
rs6940915	1.00[JPT][hapmap]
rs72989962	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989978	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993821	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993840	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73004281	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73004286	0.88[EUR][1000 genomes]
rs73600091	0.96[ASN][1000 genomes]
rs73779024	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753909	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7754166	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7758462	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7761635	0.88[EUR][1000 genomes]
rs7761698	0.88[EUR][1000 genomes]
rs7762164	0.88[EUR][1000 genomes]
rs7762928	1.00[JPT][hapmap]
rs7764138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7766254	0.88[EUR][1000 genomes]
rs7768166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7773409	1.00[JPT][hapmap]
rs7774537	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7776204	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9322165	1.00[JPT][hapmap]
rs9390657	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485353	1.00[JPT][hapmap]
rs9498199	1.00[JPT][hapmap]
rs9498201	1.00[JPT][hapmap]
rs9498202	1.00[JPT][hapmap]
rs9498204	1.00[JPT][hapmap]
rs9498205	1.00[JPT][hapmap]
rs9498207	1.00[JPT][hapmap]
rs9918331	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9918332	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149467600-149476400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:149469400-149474600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:149469800-149474200	Weak transcription	Fetal Thymus	thymus
4	chr6:149470400-149474400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr6:149470400-149474400	Weak transcription	Dnd41	blood
6	chr6:149470600-149474600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:149470800-149474600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:149470800-149475000	Weak transcription	Primary T cells from cord blood	blood
9	chr6:149471800-149474200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:149472000-149476800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:149473000-149476400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:149473200-149476600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:149473400-149476200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:149473600-149474400	Weak transcription	Small Intestine	intestine
15	chr6:149473600-149476000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:149473600-149476000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr6:149473600-149476400	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:149473600-149476400	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr6:149473800-149474400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:149473800-149474400	Enhancers	Fetal Muscle Leg	muscle
21	chr6:149473800-149474600	Enhancers	Primary hematopoietic stem cells	blood
22	chr6:149473800-149474600	Enhancers	Brain Hippocampus Middle	brain
23	chr6:149473800-149475000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:149474000-149474400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:149474000-149474800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:149474000-149476200	Enhancers	Primary T helper cells PMA-I stimulated	--

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