Variant report

Variant	rs7764138
Chromosome Location	chr6:149490481-149490482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149484833..149486828-chr6:149488896..149490980,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155624	0.86[EUR][1000 genomes]
rs11155626	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12189850	0.86[EUR][1000 genomes]
rs12190751	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12196284	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12196893	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12203266	0.86[EUR][1000 genomes]
rs12203302	0.86[EUR][1000 genomes]
rs12203458	0.86[EUR][1000 genomes]
rs12205636	0.86[EUR][1000 genomes]
rs12206852	0.84[EUR][1000 genomes]
rs12208882	0.86[EUR][1000 genomes]
rs12208962	0.86[EUR][1000 genomes]
rs12210317	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12216095	0.86[EUR][1000 genomes]
rs12216166	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35733790	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4073251	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4400235	0.86[EUR][1000 genomes]
rs4470876	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4537169	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4579380	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57241335	0.86[EUR][1000 genomes]
rs57369633	0.86[EUR][1000 genomes]
rs57471912	0.86[EUR][1000 genomes]
rs59828569	0.86[EUR][1000 genomes]
rs6900527	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6909527	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6919190	0.86[EUR][1000 genomes]
rs6919690	0.86[EUR][1000 genomes]
rs72989962	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72989978	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72993821	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72993840	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73004281	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73004286	0.86[EUR][1000 genomes]
rs73779024	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7743674	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7753909	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7754166	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7758462	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761635	0.86[EUR][1000 genomes]
rs7761698	0.86[EUR][1000 genomes]
rs7762164	0.86[EUR][1000 genomes]
rs7766254	0.86[EUR][1000 genomes]
rs7768166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774537	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9390657	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9918331	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9918332	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149484800-149491600	Weak transcription	Aorta	Aorta
2	chr6:149487800-149491200	Weak transcription	Right Atrium	heart
3	chr6:149488200-149490600	Weak transcription	NH-A	brain
4	chr6:149488200-149491200	Weak transcription	Lung	lung
5	chr6:149488200-149492000	Weak transcription	Brain Germinal Matrix	brain
6	chr6:149488200-149492400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149488400-149490800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr6:149488400-149491000	Weak transcription	Fetal Stomach	stomach
9	chr6:149488600-149491000	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:149488600-149491000	Weak transcription	Fetal Lung	lung
11	chr6:149488600-149491800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:149488600-149491800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:149488600-149492200	Weak transcription	Fetal Heart	heart
14	chr6:149489400-149490800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:149489600-149490600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:149489600-149490600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:149489600-149490800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:149489600-149491000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr6:149489800-149490600	Enhancers	Fetal Thymus	thymus
20	chr6:149489800-149490800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:149489800-149490800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr6:149489800-149490800	Enhancers	Dnd41	blood
23	chr6:149489800-149491200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:149489800-149491400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:149489800-149491600	Enhancers	Osteobl	bone
26	chr6:149489800-149492800	Enhancers	Liver	Liver
27	chr6:149489800-149492800	Enhancers	GM12878-XiMat	blood
28	chr6:149490000-149490600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:149490000-149490800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
30	chr6:149490000-149491000	Enhancers	Hela-S3	cervix
31	chr6:149490000-149491400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:149490000-149491400	Enhancers	Brain Substantia Nigra	brain
33	chr6:149490000-149491600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:149490000-149491600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:149490000-149492200	Enhancers	Placenta	Placenta
36	chr6:149490000-149492400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:149490200-149490600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr6:149490200-149490800	Enhancers	Stomach Smooth Muscle	stomach
39	chr6:149490200-149491600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:149490200-149492200	Enhancers	HSMM	muscle
41	chr6:149490400-149490600	Enhancers	Primary B cells from peripheral blood	blood
42	chr6:149490400-149490800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr6:149490400-149490800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:149490400-149490800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:149490400-149491400	Flanking Active TSS	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links