Variant report

Variant	rs12208962
Chromosome Location	chr6:149444789-149444790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149441588..149444133-chr6:149444711..149447220,3	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11155626	0.85[EUR][1000 genomes]
rs12189850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190751	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12196284	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12196893	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12203266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12203458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12206852	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210317	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12216095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216166	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35733790	0.80[EUR][1000 genomes]
rs4073251	0.88[EUR][1000 genomes]
rs4400235	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4470876	0.87[EUR][1000 genomes]
rs4537169	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579380	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57241335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57369633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57471912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59828569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900527	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6909527	0.88[EUR][1000 genomes]
rs6919190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72989962	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72989978	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72993821	0.89[EUR][1000 genomes]
rs72993840	0.87[EUR][1000 genomes]
rs73004281	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73004286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73779024	0.89[EUR][1000 genomes]
rs7743674	0.88[EUR][1000 genomes]
rs7753909	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754166	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7758462	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7761635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7764138	0.86[EUR][1000 genomes]
rs7766254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768166	0.86[EUR][1000 genomes]
rs7774537	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9390657	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9918331	0.89[EUR][1000 genomes]
rs9918332	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149442400-149448400	Weak transcription	K562	blood
2	chr6:149442600-149448200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:149443200-149447200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:149444000-149445200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:149444000-149445600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:149444000-149445600	Enhancers	Dnd41	blood
7	chr6:149444400-149444800	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr6:149444400-149445200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:149444400-149447800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:149444600-149444800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:149444600-149444800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:149444600-149445400	Enhancers	Primary T cells from cord blood	blood

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