Variant report

Variant	rs72993840
Chromosome Location	chr6:149487092-149487093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11155624	0.87[EUR][1000 genomes]
rs11155626	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12189850	0.87[EUR][1000 genomes]
rs12190751	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12196284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12196893	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12203266	0.87[EUR][1000 genomes]
rs12203302	0.87[EUR][1000 genomes]
rs12203458	0.87[EUR][1000 genomes]
rs12205636	0.87[EUR][1000 genomes]
rs12206852	0.85[EUR][1000 genomes]
rs12208882	0.87[EUR][1000 genomes]
rs12208962	0.87[EUR][1000 genomes]
rs12210317	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12216095	0.87[EUR][1000 genomes]
rs12216166	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35733790	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4073251	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4400235	0.87[EUR][1000 genomes]
rs4470876	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4537169	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4579380	0.85[EUR][1000 genomes]
rs57241335	0.87[EUR][1000 genomes]
rs57369633	0.87[EUR][1000 genomes]
rs57471912	0.87[EUR][1000 genomes]
rs59828569	0.87[EUR][1000 genomes]
rs6900527	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6909527	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6919190	0.87[EUR][1000 genomes]
rs6919690	0.87[EUR][1000 genomes]
rs72989962	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72989978	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72993821	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73004281	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73004286	0.87[EUR][1000 genomes]
rs73779024	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7743674	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7753909	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7754166	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7758462	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761635	0.87[EUR][1000 genomes]
rs7761698	0.87[EUR][1000 genomes]
rs7762164	0.87[EUR][1000 genomes]
rs7764138	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7766254	0.87[EUR][1000 genomes]
rs7768166	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774537	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9390657	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9918331	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9918332	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149476200-149487400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:149483400-149488000	Weak transcription	Placenta	Placenta
3	chr6:149484800-149491600	Weak transcription	Aorta	Aorta
4	chr6:149485200-149487200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:149486800-149487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:149486800-149488600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:149487000-149487600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr6:149487000-149487600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:149487000-149488400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:149487000-149488600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:149487000-149488600	Enhancers	Fetal Lung	lung

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