Variant report

Variant	rs11155715
Chromosome Location	chr6:150567989-150567990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12110485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110655	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123628	1.00[AFR][1000 genomes]
rs3734729	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9383747	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150559800-150568800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150560200-150568400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150560200-150571000	Weak transcription	HMEC	breast
5	chr6:150562600-150571000	Weak transcription	Psoas Muscle	Psoas
6	chr6:150565400-150569200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:150565600-150568400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:150565600-150568400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150565600-150568800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:150565600-150568800	Weak transcription	NHEK	skin
11	chr6:150566200-150568000	Enhancers	Osteobl	bone
12	chr6:150566200-150571800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:150566800-150568600	Weak transcription	K562	blood
14	chr6:150566800-150572200	Weak transcription	Right Ventricle	heart
15	chr6:150567000-150571600	Weak transcription	Fetal Heart	heart
16	chr6:150567800-150569000	Enhancers	Fetal Brain Male	brain
17	chr6:150567800-150571800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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