Variant report

Variant	rs12110655
Chromosome Location	chr6:150570355-150570356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11155715	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34123628	1.00[AFR][1000 genomes]
rs3734729	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9383747	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150560200-150571000	Weak transcription	HMEC	breast
2	chr6:150562600-150571000	Weak transcription	Psoas Muscle	Psoas
3	chr6:150566200-150571800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:150566800-150572200	Weak transcription	Right Ventricle	heart
5	chr6:150567000-150571600	Weak transcription	Fetal Heart	heart
6	chr6:150567800-150571800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:150568000-150571800	Weak transcription	Osteobl	bone
8	chr6:150568400-150570600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:150568400-150571200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:150568800-150571400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:150569000-150572000	Weak transcription	Fetal Brain Male	brain
12	chr6:150569000-150572000	Weak transcription	Lung	lung
13	chr6:150569200-150571600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150569600-150570800	Weak transcription	K562	blood
15	chr6:150569600-150572400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:150569600-150574000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:150569600-150576800	Weak transcription	Esophagus	oesophagus
18	chr6:150569800-150573400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:150569800-150576400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:150569800-150577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:150570200-150571000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:150570200-150571400	Strong transcription	NHEK	skin
23	chr6:150570200-150573600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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