Variant report

Variant	rs34123628
Chromosome Location	chr6:150579419-150579420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11155715	1.00[AFR][1000 genomes]
rs12110485	1.00[AFR][1000 genomes]
rs12110655	1.00[AFR][1000 genomes]
rs13198606	1.00[EUR][1000 genomes]
rs13207323	1.00[EUR][1000 genomes]
rs35445969	0.96[EUR][1000 genomes]
rs35548444	0.96[EUR][1000 genomes]
rs35963994	0.96[EUR][1000 genomes]
rs36001360	0.88[EUR][1000 genomes]
rs3734729	0.91[AFR][1000 genomes]
rs71570213	0.89[EUR][1000 genomes]
rs9383747	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150574800-150590800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150576400-150579600	Weak transcription	K562	blood
3	chr6:150576400-150580400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:150577400-150585200	Weak transcription	Right Ventricle	heart
5	chr6:150577400-150585400	Weak transcription	Left Ventricle	heart
6	chr6:150577400-150588200	Weak transcription	Psoas Muscle	Psoas
7	chr6:150577600-150580400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:150577800-150580000	Enhancers	HMEC	breast
9	chr6:150578000-150589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:150578200-150580600	Weak transcription	Fetal Heart	heart
11	chr6:150578400-150588000	Weak transcription	NH-A	brain
12	chr6:150579200-150587600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:150579400-150579600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:150579400-150584200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150579400-150587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:150579400-150587200	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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