Variant report

Variant	rs71570213
Chromosome Location	chr6:150559183-150559184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150557817..150561475-chr6:150561596..150566291,6	K562	blood:
2	chr6:150555928..150559365-chr6:150559823..150562005,4	K562	blood:
3	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11752137	1.00[ASN][1000 genomes]
rs11752147	1.00[ASN][1000 genomes]
rs11752703	1.00[ASN][1000 genomes]
rs11752932	1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13193924	1.00[ASN][1000 genomes]
rs13198606	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206701	1.00[ASN][1000 genomes]
rs13207323	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215621	1.00[ASN][1000 genomes]
rs34123628	0.89[EUR][1000 genomes]
rs34735685	1.00[ASN][1000 genomes]
rs34901813	1.00[ASN][1000 genomes]
rs35111820	1.00[ASN][1000 genomes]
rs35445969	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35548444	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35963994	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001360	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[ASN][1000 genomes]
rs71570212	1.00[ASN][1000 genomes]
rs73007973	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150552600-150559400	Weak transcription	Lung	lung
2	chr6:150554400-150559200	Weak transcription	K562	blood
3	chr6:150555200-150561400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:150555400-150559800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:150556400-150559800	Enhancers	Left Ventricle	heart
6	chr6:150556400-150560000	Enhancers	Fetal Heart	heart
7	chr6:150556600-150560400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:150557000-150560000	Enhancers	Right Ventricle	heart
9	chr6:150557000-150560400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:150557400-150559800	Enhancers	Fetal Lung	lung
11	chr6:150557600-150560000	Enhancers	Right Atrium	heart
12	chr6:150557600-150568800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:150557800-150559200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:150558600-150559400	Enhancers	Fetal Brain Female	brain
15	chr6:150558600-150559800	Enhancers	NHEK	skin
16	chr6:150558600-150560000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150558600-150560200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:150558600-150560200	Enhancers	HMEC	breast
19	chr6:150558800-150559800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:150558800-150560400	Enhancers	Fetal Brain Male	brain
21	chr6:150559000-150559600	Enhancers	Small Intestine	intestine
22	chr6:150559000-150559800	Enhancers	Colonic Mucosa	Colon
23	chr6:150559000-150559800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:150559000-150559800	Enhancers	Fetal Muscle Trunk	muscle
25	chr6:150559000-150559800	Enhancers	Pancreas	Pancrea
26	chr6:150559000-150559800	Enhancers	Osteobl	bone
27	chr6:150559000-150560000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:150559000-150560000	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr6:150559000-150560000	Enhancers	Fetal Muscle Leg	muscle
30	chr6:150559000-150560000	Enhancers	Psoas Muscle	Psoas
31	chr6:150559000-150560400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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