Variant report

Variant	rs35548444
Chromosome Location	chr6:150549019-150549020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
2	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11752137	1.00[ASN][1000 genomes]
rs11752147	1.00[ASN][1000 genomes]
rs11752703	1.00[ASN][1000 genomes]
rs11752932	1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13193924	1.00[ASN][1000 genomes]
rs13198606	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13206701	1.00[ASN][1000 genomes]
rs13207323	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13215621	1.00[ASN][1000 genomes]
rs34123628	0.96[EUR][1000 genomes]
rs34735685	1.00[ASN][1000 genomes]
rs34901813	1.00[ASN][1000 genomes]
rs35111820	1.00[ASN][1000 genomes]
rs35445969	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35963994	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001360	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[ASN][1000 genomes]
rs71570212	1.00[ASN][1000 genomes]
rs71570213	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007973	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150534000-150551000	Weak transcription	Right Atrium	heart
2	chr6:150537200-150550800	Weak transcription	HMEC	breast
3	chr6:150537200-150550800	Weak transcription	NHEK	skin
4	chr6:150540200-150550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:150540200-150550800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:150542600-150550600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:150542800-150550800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:150543000-150550800	Weak transcription	K562	blood
9	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
10	chr6:150547000-150549200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150547600-150549600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150548000-150549200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr6:150548000-150549800	Enhancers	Psoas Muscle	Psoas
14	chr6:150548000-150550000	Enhancers	Fetal Kidney	kidney
15	chr6:150548000-150550000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:150548000-150550000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:150548200-150551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:150548600-150549600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr6:150548800-150549200	Weak transcription	Left Ventricle	heart
20	chr6:150548800-150549400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:150548800-150550000	Enhancers	Fetal Lung	lung
22	chr6:150548800-150550800	Weak transcription	Fetal Brain Female	brain
23	chr6:150548800-150551200	Weak transcription	Right Ventricle	heart
24	chr6:150548800-150553000	Enhancers	Fetal Heart	heart
25	chr6:150549000-150550000	Enhancers	Fetal Muscle Leg	muscle

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