Variant report

Variant	rs11155740
Chromosome Location	chr6:150890189-150890190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150887790..150891706-chr6:150895678..150898252,4	K562	blood:
2	chr6:150888673..150891706-chr6:150895678..150898252,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10457863	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12190672	1.00[AFR][1000 genomes]
rs12191289	1.00[AFR][1000 genomes]
rs12191443	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12194059	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12196963	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12200272	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12200918	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12201796	0.85[EUR][1000 genomes]
rs12209840	1.00[AFR][1000 genomes]
rs12212755	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12212786	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12212969	1.00[AFR][1000 genomes]
rs12214377	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12214462	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12214961	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12216077	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12216537	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13191908	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13202911	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13213392	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34580132	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34674608	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34781801	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs34852202	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35453290	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs35597895	1.00[AFR][1000 genomes]
rs35895305	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35966095	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71570225	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs71570226	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150883400-150894200	Weak transcription	Right Atrium	heart
2	chr6:150886600-150890200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:150887200-150890600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:150887600-150891000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:150888400-150890400	Enhancers	HepG2	liver
6	chr6:150888400-150890600	Enhancers	Fetal Heart	heart
7	chr6:150888800-150890400	Enhancers	Brain Hippocampus Middle	brain
8	chr6:150889400-150890400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:150889400-150891400	Weak transcription	Placenta	Placenta
10	chr6:150889400-150893400	Weak transcription	Brain Substantia Nigra	brain
11	chr6:150889800-150891200	Enhancers	Fetal Lung	lung
12	chr6:150889800-150894200	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:150890000-150893200	Weak transcription	Liver	Liver
14	chr6:150890000-150894200	Weak transcription	Left Ventricle	heart
15	chr6:150890000-150895800	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links