Variant report

Variant	rs34580132
Chromosome Location	chr6:150886596-150886597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150875636..150878024-chr6:150884233..150886662,2	K562	blood:
2	chr6:150863886..150866190-chr6:150885198..150886787,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10457863	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11155740	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12191156	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12191289	0.82[EUR][1000 genomes]
rs12191443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194059	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12196963	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200272	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12200918	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12201796	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12207876	0.83[ASN][1000 genomes]
rs12212755	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212786	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12212969	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12214377	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12214462	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216077	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12216537	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13191908	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13202911	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210026	0.83[ASN][1000 genomes]
rs13213392	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13213909	0.91[ASN][1000 genomes]
rs13216373	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34674608	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34781801	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34852202	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35453290	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35597895	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35895305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35966095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36003654	0.82[EUR][1000 genomes]
rs71570225	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71570226	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150882800-150887200	Weak transcription	HMEC	breast
2	chr6:150883200-150887400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150883400-150894200	Weak transcription	Right Atrium	heart
4	chr6:150886000-150888400	Weak transcription	Fetal Heart	heart

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