Variant report

Variant	rs36003654
Chromosome Location	chr6:150811724-150811725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150807751..150809812-chr6:150811234..150814298,3	K562	blood:
2	chr6:150800512..150803479-chr6:150810319..150812165,2	MCF-7	breast:
3	chr6:150806855..150809448-chr6:150811234..150813450,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10457863	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12154162	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12190672	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191156	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12191289	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12191443	0.82[EUR][1000 genomes]
rs12194059	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12194349	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12196963	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12200272	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12200918	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12201796	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12207876	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12209840	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12209935	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12212755	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12212786	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12212968	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12212969	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213006	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12214377	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12214462	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12214961	0.82[EUR][1000 genomes]
rs12215115	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12216077	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13191908	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13202911	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13213392	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13216373	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34580132	0.82[EUR][1000 genomes]
rs34674608	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34781801	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34852202	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35060643	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35453290	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35597895	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35895305	0.82[EUR][1000 genomes]
rs35966095	0.82[EUR][1000 genomes]
rs71570225	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71570226	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150808000-150812200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:150808000-150812400	Weak transcription	HUVEC	blood vessel
3	chr6:150810200-150811800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:150811200-150812200	Enhancers	HMEC	breast
5	chr6:150811200-150812600	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:150811200-150813200	Enhancers	Fetal Thymus	thymus
7	chr6:150811200-150815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150811400-150812600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:150811400-150813200	Enhancers	Thymus	Thymus
10	chr6:150811400-150813800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:150811400-150814000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:150811400-150814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:150811400-150815000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:150811400-150815200	Enhancers	Fetal Muscle Leg	muscle
15	chr6:150811600-150812000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:150811600-150812000	Enhancers	NHEK	skin
17	chr6:150811600-150813200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:150811600-150813200	Enhancers	Esophagus	oesophagus
19	chr6:150811600-150813800	Enhancers	Primary T cells fromperipheralblood	blood

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